Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060244.seq
         (677 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26916| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.12 
SB_59599| Best HMM Match : rve (HMM E-Value=1.69557e-43)               31   1.1  
SB_57776| Best HMM Match : EB (HMM E-Value=2.9)                        29   3.5  
SB_46590| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_11732| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_37253| Best HMM Match : Atrophin-1 (HMM E-Value=0.68)               28   6.0  
SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   6.0  
SB_5128| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.0  

>SB_26916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1732

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 18/62 (29%), Positives = 27/62 (43%)
 Frame = +1

Query: 43  YQKRHHRMTNFKFDPAHTRAPRSTSAKPLPANDTSDIIIFAPELFDLQSSAIPRLDTHHL 222
           Y+K+  +   F   P     PR  S+ P PA D   + +F P + D   + + R     L
Sbjct: 635 YKKKERKKNRFCVIPPFRECPRKLSSNP-PALDPHTLDVFTPSIADADIAGMTRTRDAGL 693

Query: 223 PE 228
           PE
Sbjct: 694 PE 695


>SB_59599| Best HMM Match : rve (HMM E-Value=1.69557e-43)
          Length = 1803

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +1

Query: 34  YRSYQKRHHRMTNFKFDPAHTRAPRSTSAKPLPANDTSDIIIFAPELFDLQ 186
           YR  + R   MT+ + +P +   P +     LP N  SD  I  P+ FDL+
Sbjct: 796 YRIERLRSRTMTSSQ-EPFYVTLPSNAIEGALPGNTISDFTIRTPKTFDLR 845


>SB_57776| Best HMM Match : EB (HMM E-Value=2.9)
          Length = 669

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +3

Query: 375 DPD-SLEIRHKGEFSNQFPWVDLPYENGAQTLSVIAPKHDSKYDPTYFRPP 524
           +PD +L +     + + FP+   P E G  +L V    HD  +   YF PP
Sbjct: 27  EPDKTLAVTPIDSYRSSFPYFRKPSEIGHFSLDVDRKFHDDSHQLKYFCPP 77


>SB_46590| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 972

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/19 (63%), Positives = 16/19 (84%)
 Frame = +1

Query: 100 APRSTSAKPLPANDTSDII 156
           A RSTS+ PLP +DTS++I
Sbjct: 122 AVRSTSSPPLPPDDTSEVI 140


>SB_11732| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1383

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -2

Query: 580 RRRKSVRKEGGSETESFGNGGRK*VGSYFES 488
           RRR+S+ +  G    S G+GGRK   SY  S
Sbjct: 439 RRRQSLLRHTGDRDSSLGSGGRKSPHSYKHS 469


>SB_37253| Best HMM Match : Atrophin-1 (HMM E-Value=0.68)
          Length = 1113

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -2

Query: 319 GSMAVSVGSTLLMSTLVGREEGYRNGEDDGFLEDDECQVSGW 194
           GS  V++   L+     G +EG    ++  +LE DE   S W
Sbjct: 739 GSRTVAMNQRLVADISSGEKEGNLKEDNKNYLESDEMLKSSW 780


>SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1396

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 626 RLDIEMKPEMCQGLRQKEKVCKEGRRVGNGVFWQ 525
           R D+E    +C  + ++EK+ +E  RV   VFWQ
Sbjct: 677 RCDLERLRNLCYMVGKREKMRRELFRVRERVFWQ 710


>SB_5128| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2102

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 176 LTSSPQPSRDLTLIIFQKPVVLSISISFLSPYQSGH 283
           +TS P+PS   T I+   PV+ +++ S L  + + H
Sbjct: 80  MTSHPRPSDSSTSIVCAGPVIAALASSALVKHMTSH 115


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,710,511
Number of Sequences: 59808
Number of extensions: 587393
Number of successful extensions: 1617
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1610
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)