Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060244.seq
         (677 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41016-10|AAA82321.2| 1656|Caenorhabditis elegans Hypothetical p...    30   1.7  
Z19155-2|CAA79561.1| 1139|Caenorhabditis elegans Hypothetical pr...    28   7.0  
AF043697-2|AAB97556.1|  820|Caenorhabditis elegans Patched relat...    28   7.0  
Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical pr...    27   9.3  
Z70718-2|CAA94676.1|  373|Caenorhabditis elegans Hypothetical pr...    27   9.3  

>U41016-10|AAA82321.2| 1656|Caenorhabditis elegans Hypothetical
            protein R11G1.1 protein.
          Length = 1656

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
 Frame = +3

Query: 405  GEFSNQFP-WVDLPYENGAQTLSVIAPKHDSKYDPTYFRPPLPKDSVSDPPSFLTDFLLL 581
            G+ S + P W   PY +     S + P   S++  T    P P+   SD    +T   L+
Sbjct: 1562 GDLSKRQPNWDISPYRDTPGPSSFLPPITPSRHVRTAANSPQPRHRRSDSHFSMTSLPLI 1621

Query: 582  TKSLAHFWFHLYVEP 626
              S   FW   +  P
Sbjct: 1622 AHSPTSFWSSPHFHP 1636


>Z19155-2|CAA79561.1| 1139|Caenorhabditis elegans Hypothetical protein
            F54G8.3 protein.
          Length = 1139

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 237  TTGFWKMMSVKSRDG*GLEVKKFRCEN 157
            T  FW + ++K  DG   EVK   C++
Sbjct: 969  TANFWNLFAIKGGDGRPREVKHLSCQD 995


>AF043697-2|AAB97556.1|  820|Caenorhabditis elegans Patched related
           family protein 11 protein.
          Length = 820

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 444 YENGAQTLSVIAPKHDSKYDPTYFRPPLPKDSVSDPP 554
           Y N  +T+++++     KY P+Y   P   D++ +PP
Sbjct: 533 YVNFDKTMNILSTLVGEKYRPSYDNLPTWMDAIGNPP 569


>Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical
           protein F12F6.6 protein.
          Length = 1126

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
 Frame = -1

Query: 626 RLDIEMKPEMCQG---LRQKEKVCKEG 555
           R DIEM+PE+C G   L   ++ CK G
Sbjct: 502 RTDIEMRPELCLGAYDLVATKQYCKNG 528


>Z70718-2|CAA94676.1|  373|Caenorhabditis elegans Hypothetical
           protein C04G2.2 protein.
          Length = 373

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 314 YGGVCRFNTTNVHFGRERGRI 252
           + G  R+ + NVHF +E+GR+
Sbjct: 202 FRGTLRYTSPNVHFRKEQGRV 222


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,430,208
Number of Sequences: 27780
Number of extensions: 428501
Number of successful extensions: 1178
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1177
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)