Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060244.seq
(677 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride... 28 0.094
DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 28 0.094
DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride... 28 0.094
DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 27 0.22
AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein. 23 2.0
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 23 2.7
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 23 2.7
AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl sub... 23 2.7
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat... 23 3.5
DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated... 21 8.2
>DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride
channel variant 4 protein.
Length = 489
Score = 27.9 bits (59), Expect = 0.094
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Frame = +3
Query: 303 DTAIEPVYPGCDYKTVAALMMEPRDPDSLEIRHKGEFSNQFPWVD--LPYENGAQ--TLS 470
D + P G V+ L++ PD ++++ EF Q W D L Y N +Q L+
Sbjct: 75 DKRLLPPVQGTLTVNVSVLLLSLASPDESSLKYEVEFLLQQQWYDPRLRYSNRSQYEFLN 134
Query: 471 VIAPKHDSKYDPTYF 515
I D TYF
Sbjct: 135 AIHHYDDIWLPDTYF 149
>DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride
channel variant 3 protein.
Length = 475
Score = 27.9 bits (59), Expect = 0.094
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Frame = +3
Query: 303 DTAIEPVYPGCDYKTVAALMMEPRDPDSLEIRHKGEFSNQFPWVD--LPYENGAQ--TLS 470
D + P G V+ L++ PD ++++ EF Q W D L Y N +Q L+
Sbjct: 75 DKRLLPPVQGTLTVNVSVLLLSLASPDESSLKYEVEFLLQQQWYDPRLRYSNRSQYEFLN 134
Query: 471 VIAPKHDSKYDPTYF 515
I D TYF
Sbjct: 135 AIHHYDDIWLPDTYF 149
>DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride
channel protein.
Length = 458
Score = 27.9 bits (59), Expect = 0.094
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Frame = +3
Query: 303 DTAIEPVYPGCDYKTVAALMMEPRDPDSLEIRHKGEFSNQFPWVD--LPYENGAQ--TLS 470
D + P G V+ L++ PD ++++ EF Q W D L Y N +Q L+
Sbjct: 75 DKRLLPPVQGTLTVNVSVLLLSLASPDESSLKYEVEFLLQQQWYDPRLRYSNRSQYEFLN 134
Query: 471 VIAPKHDSKYDPTYF 515
I D TYF
Sbjct: 135 AIHHYDDIWLPDTYF 149
>DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride
channel variant 1 protein.
Length = 509
Score = 26.6 bits (56), Expect = 0.22
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Frame = +3
Query: 348 VAALMMEPRDPDSLEIRHKGEFSNQFPWVD--LPYENGAQ--TLSVIAPKHDSKYDPTYF 515
V+ L++ PD ++++ EF Q W D L Y N +Q L+ I D TYF
Sbjct: 141 VSVLLLSLASPDESSLKYEVEFLLQQQWYDPRLRYSNRSQYEFLNAIHHYDDIWLPDTYF 200
>AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein.
Length = 554
Score = 23.4 bits (48), Expect = 2.0
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = -2
Query: 337 SQPG*TGSMAVSVGSTLLMSTLVGREEGYRNGEDDGF 227
++PG TG+ S G+ LL L + + G +G+
Sbjct: 174 AEPGSTGTTTTSTGTRLLHGILSQHPQQHGLGVQNGY 210
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 23.0 bits (47), Expect = 2.7
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -1
Query: 515 KVSRVIFRVMFGCYN 471
K SR++F V F C+N
Sbjct: 406 KYSRIVFPVCFVCFN 420
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 23.0 bits (47), Expect = 2.7
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -1
Query: 515 KVSRVIFRVMFGCYN 471
K SR++F V F C+N
Sbjct: 406 KYSRIVFPVCFVCFN 420
>AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl
subunit protein.
Length = 365
Score = 23.0 bits (47), Expect = 2.7
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -1
Query: 515 KVSRVIFRVMFGCYN 471
K SR++F V F C+N
Sbjct: 344 KYSRIVFPVCFVCFN 358
>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
receptor protein.
Length = 1040
Score = 22.6 bits (46), Expect = 3.5
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = -3
Query: 93 MSWIEFKIGHP 61
MS I+FK+GHP
Sbjct: 570 MSAIQFKLGHP 580
>DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 469
Score = 21.4 bits (43), Expect = 8.2
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -1
Query: 527 QWRPKVSRVIFRVMFGCYN 471
QW + SR++F V F +N
Sbjct: 442 QWIDRRSRIVFPVAFIIFN 460
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,361
Number of Sequences: 438
Number of extensions: 5846
Number of successful extensions: 16
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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