Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060244.seq
         (677 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g36870.1 68417.m05228 BEL1-like homeobox 2 protein (BLH2)           30   1.6  
At3g62270.1 68416.m06996 anion exchange family protein contains ...    30   1.6  
At3g53570.3 68416.m05915 protein kinase (AFC1) (AME2) identical ...    29   2.8  
At3g53570.2 68416.m05916 protein kinase (AFC1) (AME2) identical ...    29   2.8  
At3g53570.1 68416.m05917 protein kinase (AFC1) (AME2) identical ...    29   2.8  
At1g51190.1 68414.m05758 ovule development protein, putative sim...    29   3.7  
At1g70260.1 68414.m08083 nodulin MtN21 family protein contains s...    28   4.9  
At5g58510.1 68418.m07327 expressed protein KIAA0066, Homo sapien...    28   6.5  
At3g54850.1 68416.m06077 armadillo/beta-catenin repeat family pr...    27   8.6  
At2g47160.1 68415.m05889 anion exchange family protein contains ...    27   8.6  

>At4g36870.1 68417.m05228 BEL1-like homeobox 2 protein (BLH2)
          Length = 638

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = +1

Query: 334 ATTKLWQL**WNPGTPTPLKSATRGSSPINFHGSISLMRMAPKPS--AL*HPNMTRNMT 504
           AT    QL   NP  P    S +  +SP + H S +L  + P PS     H N T +M+
Sbjct: 134 ATAAAMQLFLMNPPPPQQPPSPSSTTSPRSHHNSSTLHMLLPSPSTNTTHHQNYTNHMS 192


>At3g62270.1 68416.m06996 anion exchange family protein contains
           similarity to anion exchanger 3, cardiac splice form -
           Rattus norvegicus, PIR:A42497
          Length = 703

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 91  HTRAPRSTSAKPLPANDTSDIIIFAPELFDLQSSAIPRL 207
           HT +P+ TS+   P  + +   +F+P + DL+    PRL
Sbjct: 645 HTCSPKVTSSTSTPVYNRNLSQVFSPRVIDLRGEMSPRL 683


>At3g53570.3 68416.m05915 protein kinase (AFC1) (AME2) identical to
           protein kinase AFC1 (EC 2.7.1.-) [Arabidopsis thaliana]
          Length = 453

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = +3

Query: 336 DYKTVAALMMEPRDPDSLEIRHKGEFSNQFPWVDLPYENGAQTLSVIAPKHDSKYDPTYF 515
           DY+    ++ E   P   +   K  + + FP +DL  E G Q L  +A  HD +   T  
Sbjct: 170 DYRNHICIVFEKLGPSLYDFLRKNSYRS-FP-IDLVRELGRQLLESVAYMHDLRLIHTDL 227

Query: 516 RP 521
           +P
Sbjct: 228 KP 229


>At3g53570.2 68416.m05916 protein kinase (AFC1) (AME2) identical to
           protein kinase AFC1 (EC 2.7.1.-) [Arabidopsis thaliana]
          Length = 467

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = +3

Query: 336 DYKTVAALMMEPRDPDSLEIRHKGEFSNQFPWVDLPYENGAQTLSVIAPKHDSKYDPTYF 515
           DY+    ++ E   P   +   K  + + FP +DL  E G Q L  +A  HD +   T  
Sbjct: 184 DYRNHICIVFEKLGPSLYDFLRKNSYRS-FP-IDLVRELGRQLLESVAYMHDLRLIHTDL 241

Query: 516 RP 521
           +P
Sbjct: 242 KP 243


>At3g53570.1 68416.m05917 protein kinase (AFC1) (AME2) identical to
           protein kinase AFC1 (EC 2.7.1.-) [Arabidopsis thaliana]
          Length = 467

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = +3

Query: 336 DYKTVAALMMEPRDPDSLEIRHKGEFSNQFPWVDLPYENGAQTLSVIAPKHDSKYDPTYF 515
           DY+    ++ E   P   +   K  + + FP +DL  E G Q L  +A  HD +   T  
Sbjct: 184 DYRNHICIVFEKLGPSLYDFLRKNSYRS-FP-IDLVRELGRQLLESVAYMHDLRLIHTDL 241

Query: 516 RP 521
           +P
Sbjct: 242 KP 243


>At1g51190.1 68414.m05758 ovule development protein, putative
           similar to ovule development protein AINTEGUMENTA
           (GI:1209099) [Arabidopsis thaliana]
          Length = 568

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -1

Query: 416 GELPLVADFKGVGVPGFHH 360
           GE+P VADF GV   G HH
Sbjct: 61  GEVPKVADFLGVSKSGDHH 79


>At1g70260.1 68414.m08083 nodulin MtN21 family protein contains
           similarity to MtN21 [Medicago truncatula] GI:2598575;
           contains Pfam profile PF00892: Integral membrane protein
          Length = 375

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/32 (34%), Positives = 23/32 (71%)
 Frame = -1

Query: 188 DWRSKSSGAKIIMSEVSLAGSGLADVERGALV 93
           DWR+ S+ AK++ + VSL+G+ + ++ +G  +
Sbjct: 132 DWRNTSTRAKLMGTIVSLSGAFVEELYKGPFI 163


>At5g58510.1 68418.m07327 expressed protein KIAA0066, Homo sapiens,
           EMBL:HSORFKG1O
          Length = 963

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 162 ENYYVRGVISR*WFGRCRTRSPGMSWIEF 76
           E+ + +  +   WFG C  R+    WIEF
Sbjct: 421 ESLFTQFCLHSLWFGNCNIRAIAFLWIEF 449


>At3g54850.1 68416.m06077 armadillo/beta-catenin repeat family
           protein / U-box domain-containing family protein
           contains Pfam domain, PF00514:
           Armadillo/beta-catenin-like repeats and Pfam, PF04564:
           U-box domain
          Length = 632

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
 Frame = +3

Query: 375 DPDSLEIRHKGEFSNQFPWVDLPYEN-GAQTLSVIAPKHDSKYDPTYFRPPLPKDSVSDP 551
           DPD    R      N   +V +   +    T S I  +H S   P YFR P+  + + DP
Sbjct: 205 DPDDCFERMSSLLKNLVDFVTMESSDPDPSTGSRIVSRHRSPVIPEYFRCPISLELMKDP 264


>At2g47160.1 68415.m05889 anion exchange family protein contains
           some similarity to SWISS-PROT:P04919 anion transport
           protein (anion exchange protein 1) [Mouse] {Mus
           musculus}
          Length = 704

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +1

Query: 64  MTNFKFDPAHTRAPRSTSAKPLPANDTSDIIIFAPEL 174
           MT  + +  HT +P+ TS+   P N+ S   +F+P +
Sbjct: 635 MTRSRGEFRHTSSPKVTSSSSTPVNNRSLSQVFSPRV 671


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,837,796
Number of Sequences: 28952
Number of extensions: 421984
Number of successful extensions: 1220
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1220
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)