Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060242.seq
(669 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 173 3e-44
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 97 3e-21
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 84 2e-17
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 79 4e-16
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 48 1e-06
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 47 2e-06
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 41 2e-04
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 37 0.003
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ... 29 0.46
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 28 1.1
SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces pom... 27 2.4
SPAC1805.16c |||purine nucleoside phosphorylase |Schizosaccharom... 27 3.2
SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces pomb... 26 4.3
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom... 26 5.6
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 26 5.6
SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces pombe... 25 7.5
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 25 7.5
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 25 7.5
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ... 25 9.9
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M... 25 9.9
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 173 bits (420), Expect = 3e-44
Identities = 82/120 (68%), Positives = 96/120 (80%)
Frame = +1
Query: 259 MERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREYLAEIMFESFNVPGLYIAVQAVLA 438
MER+ +Q +FKYLR EPEDH+FL+TEPPLN PENRE AEIMFESFN GLYIAVQAVLA
Sbjct: 105 MERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLA 164
Query: 439 LAASWKSRTSAERTFTGIVSRQRNGVTHIVPVAXXYVIGSCIKHIPIAGRNITSFIQSLL 618
LAASW S +R+ TG V +GVTHI+PVA YVIGS IK +P+AGR++T F+QSLL
Sbjct: 165 LAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLL 224
Score = 71.7 bits (168), Expect = 9e-14
Identities = 37/94 (39%), Positives = 57/94 (60%), Gaps = 16/94 (17%)
Frame = +2
Query: 20 VIDVGTGYTKLGFAGNKEPQFIIPSTIAIKET-AKVGDQSTRRMT-------------KA 157
++D GTGY+KLG+AGN P ++ P+ IA + A G + + + +A
Sbjct: 9 IMDNGTGYSKLGYAGNDAPSYVFPTVIATRSAGASSGPAVSSKPSYMASKGSGHLSSKRA 68
Query: 158 VEDLDFFIGDEAFE--ATGYSVKYPVRHGIVEDW 253
EDLDFFIG++A + + GYS+ YP+RHG +E+W
Sbjct: 69 TEDLDFFIGNDALKKASAGYSLDYPIRHGQIENW 102
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 96.7 bits (230), Expect = 3e-21
Identities = 48/120 (40%), Positives = 71/120 (59%)
Frame = +1
Query: 259 MERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREYLAEIMFESFNVPGLYIAVQAVLA 438
ME+ + LR PE+H L+TE PLN NRE + +I+FE+FN P Y+A+QAVL+
Sbjct: 82 MEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQIIFETFNAPAFYVAIQAVLS 141
Query: 439 LAASWKSRTSAERTFTGIVSRQRNGVTHIVPVAXXYVIGSCIKHIPIAGRNITSFIQSLL 618
L AS ++ TGIV +GVTH VP+ Y + I + +AGR++T ++ +L
Sbjct: 142 LYASGRT--------TGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKIL 193
Score = 52.8 bits (121), Expect = 4e-08
Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Frame = +2
Query: 8 VPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGD 187
+ A VID G+G K GFAG+ P+ + PS VG + + D ++GD
Sbjct: 5 IAALVIDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHHGIMVGMGQKDSYVGD 56
Query: 188 EAFEATG-YSVKYPVRHGIVEDW 253
EA G ++KYP+ HGIV +W
Sbjct: 57 EAQSKRGILTLKYPIEHGIVNNW 79
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 83.8 bits (198), Expect = 2e-17
Identities = 45/120 (37%), Positives = 68/120 (56%)
Frame = +1
Query: 259 MERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREYLAEIMFESFNVPGLYIAVQAVLA 438
M + + F+ L+ +P L+TEPP+N NRE + E MFE + G+Y+A+QAVL+
Sbjct: 82 MNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCETMFERYGFGGVYVAIQAVLS 141
Query: 439 LAASWKSRTSAERTFTGIVSRQRNGVTHIVPVAXXYVIGSCIKHIPIAGRNITSFIQSLL 618
L A S +G+V +GVTHIVPV V+ + + +AGR+ T ++ SLL
Sbjct: 142 LYAQGLS--------SGVVVDSGDGVTHIVPVYESVVLNHLVGRLDVAGRDATRYLISLL 193
Score = 44.0 bits (99), Expect = 2e-05
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Frame = +2
Query: 20 VIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGDEAFE 199
V+D GTG+ K+G+A + P+F PS + + + ++ T V+ D +GDEA
Sbjct: 7 VLDNGTGFVKVGYAKDNFPRFQFPSIVG-RPILRAEEK-----TGNVQIKDVMVGDEAEA 60
Query: 200 ATG-YSVKYPVRHGIVEDW 253
VKYP+ +GI+ D+
Sbjct: 61 VRSLLQVKYPMENGIIRDF 79
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 79.4 bits (187), Expect = 4e-16
Identities = 45/105 (42%), Positives = 63/105 (60%)
Frame = +1
Query: 295 LRAEPEDHHFLMTEPPLNTPENREYLAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAE 474
L PE+H L+TEPPL N+E +AE +E+ NVP L ++Q VLAL AS +RT
Sbjct: 99 LNTLPEEHPLLLTEPPLANIRNKEKIAEYFYETLNVPALSFSLQPVLALYAS--ART--- 153
Query: 475 RTFTGIVSRQRNGVTHIVPVAXXYVIGSCIKHIPIAGRNITSFIQ 609
TGIV +G+TH VP+ + I S I+ I GR++T ++Q
Sbjct: 154 ---TGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRDVTDYLQ 195
Score = 44.4 bits (100), Expect = 2e-05
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Frame = +2
Query: 11 PACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGDE 190
P C ID G+G+ K GFAG+ P+ + P+ + + +V S ++ D F+G E
Sbjct: 11 PIC-IDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQK--------DMFVGSE 61
Query: 191 AFEATG-YSVKYPVRHGIVEDW 253
A G ++ P+ GI+++W
Sbjct: 62 AQNLRGLLKIQRPIERGIIQNW 83
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 48.0 bits (109), Expect = 1e-06
Identities = 25/54 (46%), Positives = 29/54 (53%)
Frame = +1
Query: 295 LRAEPEDHHFLMTEPPLNTPENREYLAEIMFESFNVPGLYIAVQAVLALAASWK 456
L+ P +H L+TEP N PENR E MFES P Y+A Q A AS K
Sbjct: 92 LKTNPLEHPILITEPFDNPPENRVKTLETMFESLRCPATYLAKQETCAAFASGK 145
Score = 32.7 bits (71), Expect = 0.049
Identities = 13/29 (44%), Positives = 21/29 (72%)
Frame = +2
Query: 8 VPACVIDVGTGYTKLGFAGNKEPQFIIPS 94
V A VID G+ +T++GF+G P+ ++PS
Sbjct: 11 VSAIVIDPGSKWTRIGFSGEDIPKCVLPS 39
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 47.2 bits (107), Expect = 2e-06
Identities = 33/120 (27%), Positives = 54/120 (45%)
Frame = +1
Query: 256 LMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREYLAEIMFESFNVPGLYIAVQAVL 435
LME+ ++ K L + +H MTEP N R + E++FE +N P + + +
Sbjct: 97 LMEQVLDYTFLK-LGIDRMEHPICMTEPLANPTYVRSTMTELLFELYNAPSVAYGIDGLF 155
Query: 436 ALAASWKSRTSAERTFTGIVSRQRNGVTHIVPVAXXYVIGSCIKHIPIAGRNITSFIQSL 615
+ + K +S GIV N +H++PV I S K I G +S++ L
Sbjct: 156 SFYHNTKPSSS------GIVLNLGNAASHVIPVLNGERILSEAKRISWGGSQSSSYLLKL 209
Score = 25.8 bits (54), Expect = 5.6
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +2
Query: 20 VIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQST 139
VID G+ + G+ G K+P+ + + ++ K+ ST
Sbjct: 28 VIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDRKLSRTST 67
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 40.7 bits (91), Expect = 2e-04
Identities = 19/55 (34%), Positives = 29/55 (52%)
Frame = +1
Query: 295 LRAEPEDHHFLMTEPPLNTPENREYLAEIMFESFNVPGLYIAVQAVLALAASWKS 459
L+ P ++ ++TEP N R+ + E FE +VP Y+ QAV A+ KS
Sbjct: 95 LQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAFYLTKQAVCVAFANSKS 149
Score = 40.3 bits (90), Expect = 2e-04
Identities = 42/167 (25%), Positives = 68/167 (40%)
Frame = +2
Query: 8 VPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGD 187
+P+ VID G+ +T+ G+AG + P I+PS ++ T R V++L
Sbjct: 10 IPSLVIDPGSCWTRFGYAGEESPMTILPSYYGVRSDV------TGRNKYVVDELQIHA-- 61
Query: 188 EAFEATGYSVKYPVRHGIVEDWV*WKGTSNSACLSISVRNPKIIIS**PSLRSTLQKTEN 367
G VK +GI++DW + L R K + P+ + + +
Sbjct: 62 ---PIPGMEVKNGKSNGIIQDW--------ESTLYTWERGLKEKLQVNPTEYAMMITEPS 110
Query: 368 I*PKSCLSHLMCQAFTLLYKPFLLWLRHGSHVRLLNAPSLAS*VDSG 508
P+S +M AF L+ P + V N+ S A VD G
Sbjct: 111 WNPQSVRQQIMEAAFEQLHVPAFYLTKQAVCVAFANSKSTALIVDIG 157
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 36.7 bits (81), Expect = 0.003
Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 6/108 (5%)
Frame = +1
Query: 313 DHHFLMTEPPLNTPENREYLAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTG- 489
D+ L+T+P P +++FE F A L + E +TG
Sbjct: 94 DYSLLLTQPVFTMPSIEHNTIQLVFEEFQFDAYLPCTPAELIPWDHGSFTMNQEDAYTGQ 153
Query: 490 -----IVSRQRNGVTHIVPVAXXYVIGSCIKHIPIAGRNITSFIQSLL 618
+V THI+PV V +K + + G+ +T++++ ++
Sbjct: 154 HGECVLVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVI 201
>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 805
Score = 29.5 bits (63), Expect = 0.46
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 386 LSHLMCQAFTLLYKPFLLWLRHGS 457
++ L+C + L+ KPF+LW RH +
Sbjct: 627 IAALICVPWLLIVKPFVLWRRHSN 650
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 28.3 bits (60), Expect = 1.1
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = -2
Query: 641 ISNLLFHGSND*INEVMFLPAIGMCFIHDPI 549
+SN++FH ++ I E++ L + + +HDP+
Sbjct: 1093 LSNVVFHDDSNPITELLDLQPLPITALHDPV 1123
>SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 220
Score = 27.1 bits (57), Expect = 2.4
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +1
Query: 319 HFLMTEPPLNTPENREYLAEIMFESFNVPGLYIAVQAVLALAASWKSRTSA 471
+F + L+ P R+YL ++ I+V +L L WKS TSA
Sbjct: 109 YFTPAQAFLSQPIIRQYLTLLLICLVETTVYQISVVLLLCLTMGWKSWTSA 159
>SPAC1805.16c |||purine nucleoside phosphorylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 315
Score = 26.6 bits (56), Expect = 3.2
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +1
Query: 298 RAEPEDHHFLMTEPPLNTPENREYLAEIMFESFNVPGLYIAVQAVLALAAS 450
+A+ + HH TEP + E REY+ E + E + P + I + L AS
Sbjct: 9 QAKQQPHH---TEPYIKALEAREYIIEQVPEELSKPKVAIICGSGLGTLAS 56
>SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 293
Score = 26.2 bits (55), Expect = 4.3
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = -3
Query: 280 TVRCTFPLNPVFYDTVAHRILYRVSCGFKSFITDEKIQIFDSLS-HPPSTL 131
TV NPV V+ I+Y V+ F F+ ++ +F+ HPP +
Sbjct: 4 TVEMLTTWNPVTVSLVSPVIIYWVASAFFGFLHYIELPVFEKYRIHPPEEI 54
>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1188
Score = 25.8 bits (54), Expect = 5.6
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = -3
Query: 259 LNPVFYDTVAHRILYRVSCGFKSFITDEKIQIFDSLSHP 143
+NP + +VA +I + SF+ + ++ D SHP
Sbjct: 246 INPEMFSSVADQIEDVMQASIPSFVENVRVASLDQGSHP 284
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 25.8 bits (54), Expect = 5.6
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -2
Query: 641 ISNLLFHGSND*INEVMFLPAIGMCFIHDPITYXS 537
+ NL F ++ + ++ A+G FIH ITY S
Sbjct: 409 LKNLFFSEKDNVLTYILQDQAVGPSFIHKVITYPS 443
>SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 264
Score = 25.4 bits (53), Expect = 7.5
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = -1
Query: 144 LRVL*SPTFAVSFIAMVDGII-NCGSLLPAKPSLVY 40
++++ S F + F+A + ++ N GSL+ AKP + Y
Sbjct: 191 IKLIDSKDFVLGFLAGLSVLLLNTGSLITAKPLISY 226
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 25.4 bits (53), Expect = 7.5
Identities = 8/20 (40%), Positives = 16/20 (80%)
Frame = -3
Query: 472 QQTYVTSMTQPKQERLVQQC 413
Q T +++MT KQE+++++C
Sbjct: 415 QSTSISAMTSEKQEQILREC 434
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 25.4 bits (53), Expect = 7.5
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +1
Query: 316 HHFLMTEPPLNTPENREYLAEIMFESFNVPGL 411
H FL+T TP+ L I+F PGL
Sbjct: 618 HSFLLTYKTFTTPQELFTLLVILFHELPPPGL 649
>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 507
Score = 25.0 bits (52), Expect = 9.9
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = -3
Query: 184 TDEKIQIFDSLSHPPSTLIANFCSFFYRYG*WNNKLWFLVTGKTQFSIPGADIDNTS 14
TDE + DSLSHP +++ G NN + T +T+ +D TS
Sbjct: 271 TDESASLEDSLSHPTKSILDQLADKMEVDG-LNNNSNYSATPRTRVVNGQIVLDETS 326
>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 556
Score = 25.0 bits (52), Expect = 9.9
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -1
Query: 666 VSKTFAQEDFQPSLSR 619
VS+ + QE+FQPS+ R
Sbjct: 298 VSRMYGQENFQPSMER 313
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,903,038
Number of Sequences: 5004
Number of extensions: 60184
Number of successful extensions: 184
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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