Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060242.seq
(669 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 206 8e-54
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 99 3e-21
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 99 3e-21
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 98 4e-21
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 98 4e-21
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 98 4e-21
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 98 4e-21
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 98 4e-21
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 98 4e-21
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 98 4e-21
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 98 4e-21
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 97 1e-20
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 90 1e-18
Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 79 3e-15
J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein ( C.ele... 53 2e-07
J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein ( C.ele... 53 2e-07
J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein ( C.ele... 53 2e-07
J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein ( C.ele... 53 2e-07
AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical ... 34 0.079
U78081-1|AAB84362.1| 246|Caenorhabditis elegans RNA polymerase ... 29 3.0
AC024832-4|AAF59612.1| 250|Caenorhabditis elegans Mediator prot... 29 3.0
AL021481-5|CAA16336.2| 455|Caenorhabditis elegans Hypothetical ... 28 6.9
AC024793-2|AAT39976.1| 338|Caenorhabditis elegans Hypothetical ... 28 6.9
Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z81110-2|CAB03259.1| 802|Caenorhabditis elegans Hypothetical pr... 27 9.1
>AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex
component protein 1 protein.
Length = 425
Score = 206 bits (504), Expect = 8e-54
Identities = 97/121 (80%), Positives = 105/121 (86%)
Frame = +1
Query: 256 LMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREYLAEIMFESFNVPGLYIAVQAVL 435
LMERY EQC+FKYLRAEPEDH FL+TEPPLNTPENREY AEIMFESFNVPGLYIAVQAVL
Sbjct: 95 LMERYWEQCIFKYLRAEPEDHFFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVL 154
Query: 436 ALAASWKSRTSAERTFTGIVSRQRNGVTHIVPVAXXYVIGSCIKHIPIAGRNITSFIQSL 615
AL ASW SR + ER+ TG+V +GVTH +PVA YVIGSCIKHIPIAGR+IT FIQSL
Sbjct: 155 ALTASWNSREANERSLTGLVIDSGDGVTHCIPVADGYVIGSCIKHIPIAGRDITYFIQSL 214
Query: 616 L 618
L
Sbjct: 215 L 215
Score = 117 bits (281), Expect = 9e-27
Identities = 57/89 (64%), Positives = 68/89 (76%), Gaps = 6/89 (6%)
Frame = +2
Query: 5 RVPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKE-TAKVGDQSTR---RMTKAVEDLD 172
++PACVID GTGYTKLG+AGN EPQFIIPS IA+K+ A Q+ R R+ ++DLD
Sbjct: 5 QLPACVIDNGTGYTKLGYAGNTEPQFIIPSAIAVKDKVASSNSQAMRWNNRVGAGIDDLD 64
Query: 173 FFIGDEAFE--ATGYSVKYPVRHGIVEDW 253
FFIGDEA AT Y+VKYP+RHGIVEDW
Sbjct: 65 FFIGDEALSPAATNYTVKYPIRHGIVEDW 93
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 98.7 bits (235), Expect = 3e-21
Identities = 49/120 (40%), Positives = 72/120 (60%)
Frame = +1
Query: 259 MERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREYLAEIMFESFNVPGLYIAVQAVLA 438
ME+ + LR PE+H L+TE PLN NRE + +IMFE+FN P +Y+A+QAVL+
Sbjct: 83 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLS 142
Query: 439 LAASWKSRTSAERTFTGIVSRQRNGVTHIVPVAXXYVIGSCIKHIPIAGRNITSFIQSLL 618
L AS ++ TGIV +GVTH VP+ Y + I + +AGR++T ++ +L
Sbjct: 143 LYASGRT--------TGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKIL 194
Score = 52.8 bits (121), Expect = 2e-07
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Frame = +2
Query: 8 VPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGD 187
V A V+D G+G K GFAG+ P+ + PS VG + + + D ++GD
Sbjct: 6 VAALVVDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYVGD 57
Query: 188 EAFEATG-YSVKYPVRHGIVEDW 253
EA G ++KYP+ HGIV +W
Sbjct: 58 EAQSKRGILTLKYPIEHGIVTNW 80
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 98.7 bits (235), Expect = 3e-21
Identities = 49/120 (40%), Positives = 72/120 (60%)
Frame = +1
Query: 259 MERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREYLAEIMFESFNVPGLYIAVQAVLA 438
ME+ + LR PE+H L+TE PLN NRE + +IMFE+FN P +Y+A+QAVL+
Sbjct: 83 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLS 142
Query: 439 LAASWKSRTSAERTFTGIVSRQRNGVTHIVPVAXXYVIGSCIKHIPIAGRNITSFIQSLL 618
L AS ++ TGIV +GVTH VP+ Y + I + +AGR++T ++ +L
Sbjct: 143 LYASGRT--------TGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKIL 194
Score = 52.0 bits (119), Expect = 4e-07
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Frame = +2
Query: 8 VPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGD 187
V A ++D G+G K GFAG+ P+ + PS VG + + + D ++GD
Sbjct: 6 VAALILDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYVGD 57
Query: 188 EAFEATG-YSVKYPVRHGIVEDW 253
EA G ++KYP+ HGIV +W
Sbjct: 58 EAQSKRGILTLKYPIEHGIVTNW 80
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 98.3 bits (234), Expect = 4e-21
Identities = 48/120 (40%), Positives = 72/120 (60%)
Frame = +1
Query: 259 MERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREYLAEIMFESFNVPGLYIAVQAVLA 438
ME+ + LR PE+H L+TE PLN NRE + +IMFE+FN P +Y+A+QAVL+
Sbjct: 83 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLS 142
Query: 439 LAASWKSRTSAERTFTGIVSRQRNGVTHIVPVAXXYVIGSCIKHIPIAGRNITSFIQSLL 618
L AS ++ TG+V +GVTH VP+ Y + I + +AGR++T ++ +L
Sbjct: 143 LYASGRT--------TGVVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKIL 194
Score = 52.8 bits (121), Expect = 2e-07
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Frame = +2
Query: 8 VPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGD 187
V A V+D G+G K GFAG+ P+ + PS VG + + + D ++GD
Sbjct: 6 VAALVVDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYVGD 57
Query: 188 EAFEATG-YSVKYPVRHGIVEDW 253
EA G ++KYP+ HGIV +W
Sbjct: 58 EAQSKRGILTLKYPIEHGIVTNW 80
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 98.3 bits (234), Expect = 4e-21
Identities = 48/120 (40%), Positives = 72/120 (60%)
Frame = +1
Query: 259 MERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREYLAEIMFESFNVPGLYIAVQAVLA 438
ME+ + LR PE+H L+TE PLN NRE + +IMFE+FN P +Y+A+QAVL+
Sbjct: 83 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLS 142
Query: 439 LAASWKSRTSAERTFTGIVSRQRNGVTHIVPVAXXYVIGSCIKHIPIAGRNITSFIQSLL 618
L AS ++ TG+V +GVTH VP+ Y + I + +AGR++T ++ +L
Sbjct: 143 LYASGRT--------TGVVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKIL 194
Score = 52.8 bits (121), Expect = 2e-07
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Frame = +2
Query: 8 VPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGD 187
V A V+D G+G K GFAG+ P+ + PS VG + + + D ++GD
Sbjct: 6 VAALVVDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYVGD 57
Query: 188 EAFEATG-YSVKYPVRHGIVEDW 253
EA G ++KYP+ HGIV +W
Sbjct: 58 EAQSKRGILTLKYPIEHGIVTNW 80
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 98.3 bits (234), Expect = 4e-21
Identities = 48/120 (40%), Positives = 72/120 (60%)
Frame = +1
Query: 259 MERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREYLAEIMFESFNVPGLYIAVQAVLA 438
ME+ + LR PE+H L+TE PLN NRE + +IMFE+FN P +Y+A+QAVL+
Sbjct: 83 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLS 142
Query: 439 LAASWKSRTSAERTFTGIVSRQRNGVTHIVPVAXXYVIGSCIKHIPIAGRNITSFIQSLL 618
L AS ++ TG+V +GVTH VP+ Y + I + +AGR++T ++ +L
Sbjct: 143 LYASGRT--------TGVVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKIL 194
Score = 52.8 bits (121), Expect = 2e-07
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Frame = +2
Query: 8 VPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGD 187
V A V+D G+G K GFAG+ P+ + PS VG + + + D ++GD
Sbjct: 6 VAALVVDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYVGD 57
Query: 188 EAFEATG-YSVKYPVRHGIVEDW 253
EA G ++KYP+ HGIV +W
Sbjct: 58 EAQSKRGILTLKYPIEHGIVTNW 80
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 98.3 bits (234), Expect = 4e-21
Identities = 48/120 (40%), Positives = 72/120 (60%)
Frame = +1
Query: 259 MERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREYLAEIMFESFNVPGLYIAVQAVLA 438
ME+ + LR PE+H L+TE PLN NRE + +IMFE+FN P +Y+A+QAVL+
Sbjct: 83 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLS 142
Query: 439 LAASWKSRTSAERTFTGIVSRQRNGVTHIVPVAXXYVIGSCIKHIPIAGRNITSFIQSLL 618
L AS ++ TG+V +GVTH VP+ Y + I + +AGR++T ++ +L
Sbjct: 143 LYASGRT--------TGVVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKIL 194
Score = 52.8 bits (121), Expect = 2e-07
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Frame = +2
Query: 8 VPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGD 187
V A V+D G+G K GFAG+ P+ + PS VG + + + D ++GD
Sbjct: 6 VAALVVDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYVGD 57
Query: 188 EAFEATG-YSVKYPVRHGIVEDW 253
EA G ++KYP+ HGIV +W
Sbjct: 58 EAQSKRGILTLKYPIEHGIVTNW 80
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 98.3 bits (234), Expect = 4e-21
Identities = 48/120 (40%), Positives = 72/120 (60%)
Frame = +1
Query: 259 MERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREYLAEIMFESFNVPGLYIAVQAVLA 438
ME+ + LR PE+H L+TE PLN NRE + +IMFE+FN P +Y+A+QAVL+
Sbjct: 83 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLS 142
Query: 439 LAASWKSRTSAERTFTGIVSRQRNGVTHIVPVAXXYVIGSCIKHIPIAGRNITSFIQSLL 618
L AS ++ TG+V +GVTH VP+ Y + I + +AGR++T ++ +L
Sbjct: 143 LYASGRT--------TGVVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKIL 194
Score = 52.8 bits (121), Expect = 2e-07
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Frame = +2
Query: 8 VPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGD 187
V A V+D G+G K GFAG+ P+ + PS VG + + + D ++GD
Sbjct: 6 VAALVVDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYVGD 57
Query: 188 EAFEATG-YSVKYPVRHGIVEDW 253
EA G ++KYP+ HGIV +W
Sbjct: 58 EAQSKRGILTLKYPIEHGIVTNW 80
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 98.3 bits (234), Expect = 4e-21
Identities = 48/120 (40%), Positives = 72/120 (60%)
Frame = +1
Query: 259 MERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREYLAEIMFESFNVPGLYIAVQAVLA 438
ME+ + LR PE+H L+TE PLN NRE + +IMFE+FN P +Y+A+QAVL+
Sbjct: 39 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLS 98
Query: 439 LAASWKSRTSAERTFTGIVSRQRNGVTHIVPVAXXYVIGSCIKHIPIAGRNITSFIQSLL 618
L AS ++ TG+V +GVTH VP+ Y + I + +AGR++T ++ +L
Sbjct: 99 LYASGRT--------TGVVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKIL 150
Score = 35.1 bits (77), Expect = 0.045
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +2
Query: 170 DFFIGDEAFEATGY-SVKYPVRHGIVEDW 253
D ++GDEA G ++KYP+ HGIV +W
Sbjct: 8 DSYVGDEAQSKRGILTLKYPIEHGIVTNW 36
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 98.3 bits (234), Expect = 4e-21
Identities = 48/120 (40%), Positives = 72/120 (60%)
Frame = +1
Query: 259 MERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREYLAEIMFESFNVPGLYIAVQAVLA 438
ME+ + LR PE+H L+TE PLN NRE + +IMFE+FN P +Y+A+QAVL+
Sbjct: 69 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLS 128
Query: 439 LAASWKSRTSAERTFTGIVSRQRNGVTHIVPVAXXYVIGSCIKHIPIAGRNITSFIQSLL 618
L AS ++ TG+V +GVTH VP+ Y + I + +AGR++T ++ +L
Sbjct: 129 LYASGRT--------TGVVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKIL 180
Score = 40.7 bits (91), Expect = 0.001
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +2
Query: 47 KLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGDEAFEATGY-SVKY 223
+ GFAG+ P+ + PS VG + + + D ++GDEA G ++KY
Sbjct: 5 RAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKY 56
Query: 224 PVRHGIVEDW 253
P+ HGIV +W
Sbjct: 57 PIEHGIVTNW 66
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 98.3 bits (234), Expect = 4e-21
Identities = 48/120 (40%), Positives = 72/120 (60%)
Frame = +1
Query: 259 MERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREYLAEIMFESFNVPGLYIAVQAVLA 438
ME+ + LR PE+H L+TE PLN NRE + +IMFE+FN P +Y+A+QAVL+
Sbjct: 83 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLS 142
Query: 439 LAASWKSRTSAERTFTGIVSRQRNGVTHIVPVAXXYVIGSCIKHIPIAGRNITSFIQSLL 618
L AS ++ TG+V +GVTH VP+ Y + I + +AGR++T ++ +L
Sbjct: 143 LYASGRT--------TGVVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKIL 194
Score = 52.8 bits (121), Expect = 2e-07
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Frame = +2
Query: 8 VPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGD 187
V A V+D G+G K GFAG+ P+ + PS VG + + + D ++GD
Sbjct: 6 VAALVVDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYVGD 57
Query: 188 EAFEATG-YSVKYPVRHGIVEDW 253
EA G ++KYP+ HGIV +W
Sbjct: 58 EAQSKRGILTLKYPIEHGIVTNW 80
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 96.7 bits (230), Expect = 1e-20
Identities = 48/120 (40%), Positives = 72/120 (60%)
Frame = +1
Query: 259 MERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREYLAEIMFESFNVPGLYIAVQAVLA 438
ME+ + LR PE+H L+TE PLN NRE + +IMFE+FN P +Y+ +QAVL+
Sbjct: 82 MEKIWHHTFYNELRIAPEEHPVLLTEAPLNPKSNREKMTQIMFETFNTPAMYVNIQAVLS 141
Query: 439 LAASWKSRTSAERTFTGIVSRQRNGVTHIVPVAXXYVIGSCIKHIPIAGRNITSFIQSLL 618
L AS ++ TGIV +GVTH VP+ Y + I+ + +AGR++T ++ +L
Sbjct: 142 LYASGRT--------TGIVLDTGDGVTHTVPIYEGYALPHAIQRLDLAGRDLTDYMMKIL 193
Score = 52.4 bits (120), Expect = 3e-07
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Frame = +2
Query: 8 VPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGD 187
+ A V+D G+G K GFAG+ P+ + PS VG + + + D ++GD
Sbjct: 5 IAALVVDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYVGD 56
Query: 188 EAFEATG-YSVKYPVRHGIVEDW 253
EA G ++KYP+ HGIV +W
Sbjct: 57 EAQSKRGILTLKYPIEHGIVTNW 79
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 90.2 bits (214), Expect = 1e-18
Identities = 46/108 (42%), Positives = 70/108 (64%)
Frame = +1
Query: 295 LRAEPEDHHFLMTEPPLNTPENREYLAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAE 474
L+ PE+H L+T+ PLN +NRE AEI FE+FNVP LYI +QAVL+L A+ ++
Sbjct: 98 LKIFPEEHPVLLTDAPLNPLKNRERSAEIFFETFNVPALYIQMQAVLSLYATGRT----- 152
Query: 475 RTFTGIVSRQRNGVTHIVPVAXXYVIGSCIKHIPIAGRNITSFIQSLL 618
TG+V +GVTH VP+ + + I+ + +AGR++T +++ LL
Sbjct: 153 ---TGVVLDSGDGVTHAVPIVKGFAMKHAIQRMDLAGRDVTEYLRVLL 197
Score = 48.8 bits (111), Expect = 3e-06
Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Frame = +2
Query: 20 VIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGDEAFE 199
VID G+G K GFAG ++P+ ++ VG R+ D D FIG +A
Sbjct: 12 VIDNGSGVIKAGFAGEQQPK--------VRFANFVGRPKYHRVMAGGLDGDIFIGPKAES 63
Query: 200 ATG-YSVKYPVRHGIVEDW 253
G +S++YP+ HGIV +W
Sbjct: 64 NRGLFSIEYPMEHGIVNNW 82
>Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical
protein K07C5.1 protein.
Length = 395
Score = 79.0 bits (186), Expect = 3e-15
Identities = 42/108 (38%), Positives = 62/108 (57%)
Frame = +1
Query: 295 LRAEPEDHHFLMTEPPLNTPENREYLAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAE 474
L +P++ L+TEPPLN NRE + ++MFE + +Y+AVQAVL L A+
Sbjct: 98 LDIDPKECKLLLTEPPLNPNSNREKMFQVMFEQYGFNSIYVAVQAVLTL--------YAQ 149
Query: 475 RTFTGIVSRQRNGVTHIVPVAXXYVIGSCIKHIPIAGRNITSFIQSLL 618
TG+V +GVTHI PV + + + + IAGR+IT ++ LL
Sbjct: 150 GLLTGVVVDSGDGVTHICPVYEGFALHHLTRRLDIAGRDITKYLIKLL 197
Score = 46.0 bits (104), Expect = 2e-05
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Frame = +2
Query: 20 VIDVGTGYTKLGFAGNKEPQFIIPSTIA---IKETAKVGDQSTRRMTKAVEDLDFFIGDE 190
V+D GTG+ K G+AG P I PS + ++ T +VG+ +E D +G+E
Sbjct: 10 VVDNGTGFVKCGYAGTNFPAHIFPSMVGRPIVRSTQRVGN---------IEIKDLMVGEE 60
Query: 191 AFEATG-YSVKYPVRHGIVEDW 253
+ + YP+ +GIV +W
Sbjct: 61 CSQLRQMLDINYPMDNGIVRNW 82
>J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene IV, 5' end. ).
Length = 86
Score = 52.8 bits (121), Expect = 2e-07
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Frame = +2
Query: 8 VPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGD 187
V A V+D G+G K GFAG+ P+ + PS VG + + + D ++GD
Sbjct: 6 VAALVVDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYVGD 57
Query: 188 EAFEATG-YSVKYPVRHGIVEDW 253
EA G ++KYP+ HGIV +W
Sbjct: 58 EAQSKRGILTLKYPIEHGIVTNW 80
>J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene III, 5' end. ).
Length = 86
Score = 52.8 bits (121), Expect = 2e-07
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Frame = +2
Query: 8 VPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGD 187
V A V+D G+G K GFAG+ P+ + PS VG + + + D ++GD
Sbjct: 6 VAALVVDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYVGD 57
Query: 188 EAFEATG-YSVKYPVRHGIVEDW 253
EA G ++KYP+ HGIV +W
Sbjct: 58 EAQSKRGILTLKYPIEHGIVTNW 80
>J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene II, 5' end. ).
Length = 83
Score = 52.8 bits (121), Expect = 2e-07
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Frame = +2
Query: 8 VPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGD 187
V A V+D G+G K GFAG+ P+ + PS VG + + + D ++GD
Sbjct: 6 VAALVVDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYVGD 57
Query: 188 EAFEATG-YSVKYPVRHGIVEDW 253
EA G ++KYP+ HGIV +W
Sbjct: 58 EAQSKRGILTLKYPIEHGIVTNW 80
>J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene I, 5' end. ).
Length = 86
Score = 52.8 bits (121), Expect = 2e-07
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Frame = +2
Query: 8 VPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGD 187
V A V+D G+G K GFAG+ P+ + PS VG + + + D ++GD
Sbjct: 6 VAALVVDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYVGD 57
Query: 188 EAFEATG-YSVKYPVRHGIVEDW 253
EA G ++KYP+ HGIV +W
Sbjct: 58 EAQSKRGILTLKYPIEHGIVTNW 80
>AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical
protein ZK616.4 protein.
Length = 436
Score = 34.3 bits (75), Expect = 0.079
Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 10/92 (10%)
Frame = +2
Query: 8 VPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKET--------AKVGDQSTRRMTKAVE 163
V V D G+ ++GFAG + P+ IPS IA++E + ++ +
Sbjct: 11 VSGLVFDAGSQSFRVGFAGEEYPKGDIPSYIAVQEALPDDTIEKQEAMEEGDNSKVQTKR 70
Query: 164 DLDFFIGDEAF--EATGYSVKYPVRHGIVEDW 253
+ +FFIG +++ ++ G++EDW
Sbjct: 71 EKNFFIGTTKIIVPRARTNMESFMKEGLIEDW 102
>U78081-1|AAB84362.1| 246|Caenorhabditis elegans RNA polymerase
transcriptionalregulation mediator protein.
Length = 246
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +1
Query: 490 IVSRQRNGVTHIVPVAXXYVIGSCIKHIPIAGRNITSFIQSLL 618
I ++RN VT++ P+A YVI + P ++ S +QS L
Sbjct: 87 ICKQRRNNVTNVSPIAYYYVINGSVHQAP----DMYSLVQSRL 125
>AC024832-4|AAF59612.1| 250|Caenorhabditis elegans Mediator protein
6 protein.
Length = 250
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +1
Query: 490 IVSRQRNGVTHIVPVAXXYVIGSCIKHIPIAGRNITSFIQSLL 618
I ++RN VT++ P+A YVI + P ++ S +QS L
Sbjct: 91 ICKQRRNNVTNVSPIAYYYVINGSVHQAP----DMYSLVQSRL 129
>AL021481-5|CAA16336.2| 455|Caenorhabditis elegans Hypothetical
protein Y43F4B.7 protein.
Length = 455
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +2
Query: 164 DLDFFIGDEAFEATGYSVKYPVRHGIVED--WV*WKGTSNSACLSI 295
DL F G F G +V P+ + + ++ W G NS+CL +
Sbjct: 244 DLPLFFGTVMFAFEGVAVIMPIENRMQSPHAFISWNGVLNSSCLVV 289
>AC024793-2|AAT39976.1| 338|Caenorhabditis elegans Hypothetical
protein Y48G1BL.7 protein.
Length = 338
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -2
Query: 590 FLPAIGMCFIHDPITYXSATGTM 522
FL AI MCF+HDP T+ + T+
Sbjct: 96 FLTAI-MCFLHDPQTFKDSNRTL 117
>Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical
protein T01D3.3b protein.
Length = 1011
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Frame = +3
Query: 399 CARPLHCCTSRSCF-GCVMEVTYV 467
CA PL C S CF GCV YV
Sbjct: 582 CANPLGRCGSGQCFSGCVCRQPYV 605
>Z81110-2|CAB03259.1| 802|Caenorhabditis elegans Hypothetical
protein T01D3.3a protein.
Length = 802
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Frame = +3
Query: 399 CARPLHCCTSRSCF-GCVMEVTYV 467
CA PL C S CF GCV YV
Sbjct: 373 CANPLGRCGSGQCFSGCVCRQPYV 396
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,951,033
Number of Sequences: 27780
Number of extensions: 336820
Number of successful extensions: 744
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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