Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060242.seq
         (669 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              25   0.86 
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   2.6  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   3.5  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   3.5  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   3.5  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    22   6.1  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    22   6.1  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    22   6.1  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 24.6 bits (51), Expect = 0.86
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 428 PFLLWLRHGSHVRLLNAPSLAS*VDSGMALLTLFQL 535
           P L+W R+G+ +  LN P +    + G   LT  QL
Sbjct: 340 PPLVWRRNGADLETLNEPEIRV-FNDGSLYLTKVQL 374


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = +3

Query: 543 ICYWIMYKTH 572
           ICYW++Y T+
Sbjct: 485 ICYWVIYVTY 494


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 605 INEVMFLPAIGMCFIHDPIT 546
           +NE M+L A+ +  IH P T
Sbjct: 133 VNEQMYLYALSVAVIHRPDT 152


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 605 INEVMFLPAIGMCFIHDPIT 546
           +NE M+L A+ +  IH P T
Sbjct: 133 VNEQMYLYALSVAVIHRPDT 152


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 588 KHYFIYSIITPVKEKVGNPPEQRF 659
           K Y+I+  + PVK+  GNP + ++
Sbjct: 146 KDYYIW--VDPVKDDKGNPIKDKY 167


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 60  AKPSLVYPVPTSITQAG 10
           AKPSL+   PT +T  G
Sbjct: 270 AKPSLIDDEPTEVTIGG 286


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 60  AKPSLVYPVPTSITQAG 10
           AKPSL+   PT +T  G
Sbjct: 270 AKPSLIDDEPTEVTIGG 286


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 60  AKPSLVYPVPTSITQAG 10
           AKPSL+   PT +T  G
Sbjct: 270 AKPSLIDDEPTEVTIGG 286


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,036
Number of Sequences: 438
Number of extensions: 4547
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)