Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060241.seq
         (575 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     22   3.3  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   5.7  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   5.7  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     21   5.7  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   5.7  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    21   5.7  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    21   9.9  

>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 10/70 (14%)
 Frame = -2

Query: 352 HPDRTYEYH---HHGHAEFGRQHVQYPMIQHWFGDHLL-------AHAVGLPRVLGHRNV 203
           HP  T+ YH   H+    F   H  +      FG  ++        HA      L    +
Sbjct: 158 HPGMTFRYHFNVHNSGTHFWHSHSGFQRSDGTFGPFIVRVPEEDNPHAKLYDYDLSSHVI 217

Query: 202 NIIDQVRTDG 173
            I+D  + DG
Sbjct: 218 TILDWTKEDG 227


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = -2

Query: 307 FGRQHVQYPMIQHWFGDH 254
           FG  H+Q   +Q+ + +H
Sbjct: 50  FGNHHIQQQQLQYGYHNH 67


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = -2

Query: 307 FGRQHVQYPMIQHWFGDH 254
           FG  H+Q   +Q+ + +H
Sbjct: 50  FGNHHIQQQQLQYGYHNH 67


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -1

Query: 140 HPAPSHSSLNTPTL 99
           HPA +HS+L +P +
Sbjct: 121 HPAAAHSALLSPAM 134


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = -2

Query: 307 FGRQHVQYPMIQHWFGDH 254
           FG  H+Q   +Q+ + +H
Sbjct: 50  FGNHHIQQQQLQYGYHNH 67


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = -2

Query: 307 FGRQHVQYPMIQHWFGDH 254
           FG  H+Q   +Q+ + +H
Sbjct: 50  FGNHHIQQQQLQYGYHNH 67


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +1

Query: 154 PVRVQGAHPSGPGQ*CSRFYVQELEAAL 237
           PVR+ G H  G    C++      E AL
Sbjct: 196 PVRIMGVHRPGFDNDCNKNTSTSKEIAL 223


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,164
Number of Sequences: 336
Number of extensions: 2548
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14308417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)