Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060241.seq
(575 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0578 + 4295386-4296489,4297394-4297507 128 4e-30
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 127 5e-30
10_02_0199 + 6668902-6669293,6669825-6669882 38 0.008
11_01_0748 + 6299776-6300042 32 0.28
03_05_0358 - 23438416-23439282,23440116-23440163,23440343-234403... 31 0.50
01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149 31 0.50
07_01_0524 + 3892340-3894625,3894995-3895109,3895204-3895298,389... 31 0.66
10_08_0975 - 21978642-21979520 31 0.87
03_01_0520 - 3900387-3900613,3900812-3900853,3902092-3902210,390... 31 0.87
07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988 30 1.1
06_01_1010 + 7866158-7866661 30 1.5
12_02_0634 + 21416205-21416954 29 2.0
12_01_0073 + 613316-613447,613611-613802,614067-614232,614460-61... 29 2.0
10_08_0219 - 15972061-15972110,15972411-15972632,15972673-15972955 29 3.5
07_03_0329 + 16840051-16840917,16840999-16841342,16841444-168415... 29 3.5
02_04_0457 + 23093020-23093343,23093798-23093806 29 3.5
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485... 28 4.6
02_04_0029 + 19036176-19036481,19036602-19036733,19036814-190369... 28 4.6
02_03_0097 + 15166077-15166349,15166623-15166694,15166715-151671... 28 4.6
10_01_0359 + 3956527-3956616,3957623-3957818,3958102-3959418,395... 28 6.1
10_08_0213 - 15912048-15912716 27 8.1
03_06_0646 + 35260497-35262371,35262500-35262683,35262906-352630... 27 8.1
03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657 27 8.1
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 128 bits (308), Expect = 4e-30
Identities = 61/91 (67%), Positives = 69/91 (75%)
Frame = +1
Query: 256 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFXPTKPXRRWHRRCQPX 435
GHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMF PTK R+WHRR
Sbjct: 63 GHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTWRKWHRRVN-V 121
Query: 436 DSGERPWPAAVAATGVPALVXAXRNIIEKIP 528
+A+AAT VP+LV A + IE +P
Sbjct: 122 HLRRVAVASALAATSVPSLVLARGHRIETVP 152
Score = 48.4 bits (110), Expect = 4e-06
Identities = 26/55 (47%), Positives = 36/55 (65%), Gaps = 2/55 (3%)
Frame = +2
Query: 92 RPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSK 250
RPLVSV + + + T ++ L VF+AP+RPD+V VH +S N RQPY VS+
Sbjct: 6 RPLVSVKALEGDMATDNSSSLALAEVFRAPLRPDVVRFVHRLLSCNKRQPYAVSR 60
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 127 bits (307), Expect = 5e-30
Identities = 62/91 (68%), Positives = 69/91 (75%)
Frame = +1
Query: 256 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFXPTKPXRRWHRRCQPX 435
GHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMF PTK RRWHRR
Sbjct: 62 GHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRRVN-I 120
Query: 436 DSGERPWPAAVAATGVPALVXAXRNIIEKIP 528
+A+AAT VP+LV A + IE +P
Sbjct: 121 RLRRIAVASALAATAVPSLVLARGHRIEGVP 151
Score = 50.4 bits (115), Expect = 1e-06
Identities = 27/57 (47%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Frame = +2
Query: 83 SVARPLVSVYS-EKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSK 250
+ ARPLVSV + E A +P V +APIRPD+V H +S N RQPY VS+
Sbjct: 3 AAARPLVSVKALEGDMATDSAGIQMPQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSR 59
>10_02_0199 + 6668902-6669293,6669825-6669882
Length = 149
Score = 37.5 bits (83), Expect = 0.008
Identities = 22/47 (46%), Positives = 24/47 (51%)
Frame = +1
Query: 241 REQGGGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 381
RE GGG A+SW TGRA A + R R GG R A N G R
Sbjct: 30 REGGGG----AQSWATGRAAAELGRGRKGGRRRGLAQAAANSGEGNR 72
>11_01_0748 + 6299776-6300042
Length = 88
Score = 32.3 bits (70), Expect = 0.28
Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +1
Query: 223 LEAALL--REQGGGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG 378
LEA L+ R GGG + E+ G GRAVA + R H +G GA GG
Sbjct: 16 LEAVLVDRRMAGGGDDGAVETGGGGRAVAALARCWRRRWHGAGGGAGAVEAGGG 69
>03_05_0358 -
23438416-23439282,23440116-23440163,23440343-23440382,
23440459-23440610
Length = 368
Score = 31.5 bits (68), Expect = 0.50
Identities = 26/86 (30%), Positives = 31/86 (36%), Gaps = 9/86 (10%)
Frame = +1
Query: 256 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFXPTKPXRRWHR--RCQ 429
G +TS GT + RG G G+ GGR + RRW R RC+
Sbjct: 214 GSETSLAQRGTADSSGGRLGARGAGGGVGGRLGARGATDGGRPAWRERRGRRWRRRPRCE 273
Query: 430 -------PXDSGERPWPAAVAATGVP 486
S WPA A GVP
Sbjct: 274 EEQLVGVARSSAHEGWPAGDAGAGVP 299
>01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149
Length = 248
Score = 31.5 bits (68), Expect = 0.50
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Frame = -2
Query: 436 PXVDSDGANAXRASWGRTYVH--HDTCYRRHPDRTYEYHH-HGHAEFGRQHVQYPMIQHW 266
P ++D A A A+ T +H HD Y T+++HH HGH FGR H +P H
Sbjct: 117 PPAEADQAAAPPAT-DATVIHMVHDYPY------THDHHHGHGHHLFGRDH--WPASHHP 167
Query: 265 FGDHLLAHAVGLPRVLGH 212
G ++ + G P H
Sbjct: 168 AGG-MVNYGGGAPYYAAH 184
>07_01_0524 +
3892340-3894625,3894995-3895109,3895204-3895298,
3895929-3896167,3896524-3896610,3896967-3897066,
3897908-3898115,3898224-3899422
Length = 1442
Score = 31.1 bits (67), Expect = 0.66
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Frame = +1
Query: 217 QELEAALLREQGGGHQTSAESWGTGRAVAR--IPRVRGGGTHRSGQGAFGNMCR---GGR 381
+++ A ++GGG S S G++V + + R+R H G G+ G++ + GG+
Sbjct: 64 EKVSGAKSTDEGGGSDKSKGS-EVGKSVLQPDVKRIRTEAAHGGGSGSGGSVSKDGTGGK 122
Query: 382 MFXPTKPXRRWHR 420
M P P R+ +
Sbjct: 123 MLRPGFPKWRFEK 135
>10_08_0975 - 21978642-21979520
Length = 292
Score = 30.7 bits (66), Expect = 0.87
Identities = 20/61 (32%), Positives = 24/61 (39%)
Frame = +1
Query: 256 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFXPTKPXRRWHRRCQPX 435
G T++ W + AR R R G SG G G + PT RRCQP
Sbjct: 197 GGSTTSSWWFPSPSPARQHRRRHTGVGASGDGISGFAVCLSPLVRPTSGGGGGRRRCQPP 256
Query: 436 D 438
D
Sbjct: 257 D 257
>03_01_0520 -
3900387-3900613,3900812-3900853,3902092-3902210,
3903633-3903712,3903829-3903856,3904151-3904272,
3904714-3904857,3904897-3906327
Length = 730
Score = 30.7 bits (66), Expect = 0.87
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -2
Query: 376 HHDTCYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQHWFGDH 254
HH + H + YE+ + H + RQ QY QH +H
Sbjct: 150 HHQQYQQHHHQQQYEHQNRIHFQHHRQQQQYQQHQHHNQNH 190
>07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988
Length = 292
Score = 30.3 bits (65), Expect = 1.1
Identities = 19/52 (36%), Positives = 22/52 (42%)
Frame = +1
Query: 55 ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRVQGAHPSGPGQ*CSRF 210
ASL N + P+F V G SQA V + GAH G Q C F
Sbjct: 125 ASLALANSDLPPPSFDVANLTASFAAKGLSQADMVALSGAHTVGQAQ-CQNF 175
>06_01_1010 + 7866158-7866661
Length = 167
Score = 29.9 bits (64), Expect = 1.5
Identities = 23/73 (31%), Positives = 28/73 (38%)
Frame = +1
Query: 250 GGGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFXPTKPXRRWHRRCQ 429
GGG Q + GT A + + GGG G G GR + P +R HRR
Sbjct: 40 GGGGQRAEGRGGTADARRKEAGMPGGGARAPGSGK-------GRRWRPEHGGKRRHRRRT 92
Query: 430 PXDSGERPWPAAV 468
G P AV
Sbjct: 93 GRKEGGEPGVGAV 105
>12_02_0634 + 21416205-21416954
Length = 249
Score = 29.5 bits (63), Expect = 2.0
Identities = 37/110 (33%), Positives = 44/110 (40%), Gaps = 9/110 (8%)
Frame = +1
Query: 178 PSGPGQ*CSRFYVQELEAALLREQGGGHQT----SAESWGTGRAVARIP----RVRGGGT 333
P P + +R V+ A + R G + A SW GR R P R RGG
Sbjct: 66 PGQPEEMSTRRKVRPARATVFRRCSGEEEVIPGMRAASWSRGRWWRRRPALRGRGRGGRR 125
Query: 334 HRSGQGAFGNMCRGGRMFXPTKPXRRWHR-RCQPXDSGERPWPAAVAATG 480
RSG A G R GR+ RR R R D+G R AA TG
Sbjct: 126 RRSGGDATGR--RRGRVSGAFPAKRRADRGRGGSCDAG-RGGGAAGGCTG 172
>12_01_0073 +
613316-613447,613611-613802,614067-614232,614460-614845
Length = 291
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +1
Query: 55 ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRVQGAHPSGPGQ*CSRF 210
ASL N I +PTF +G + G S + + GAH G + C F
Sbjct: 126 ASLDTANNDIPAPTFDLGDLTKSFSNKGLSATDMIALSGAHTIGQAR-CVNF 176
>10_08_0219 - 15972061-15972110,15972411-15972632,15972673-15972955
Length = 184
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +1
Query: 250 GGGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFG 360
GGG WG+G + + GGG + SG G G
Sbjct: 38 GGGGSNGGSGWGSGSG-SGYGQASGGGAYASGGGGAG 73
>07_03_0329 +
16840051-16840917,16840999-16841342,16841444-16841574,
16841671-16841792,16841877-16841983,16842104-16842236,
16842342-16842458,16842560-16842667,16842716-16842742,
16842759-16842830,16843462-16843584,16843671-16843833,
16844140-16844264,16844355-16844489,16844574-16844677,
16844772-16844834,16844930-16844993,16845186-16845318,
16845414-16845487,16845603-16845697,16845799-16845830,
16846201-16846355
Length = 1097
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +1
Query: 250 GGGHQTSAES-WGTGRAVARIPRVRGGGTHRSGQGAFGN 363
GGG+ E+ +G GR RGGG R G+G G+
Sbjct: 168 GGGYHGDGEAGYGRGRGGRDYDGGRGGGGRRGGRGGGGS 206
>02_04_0457 + 23093020-23093343,23093798-23093806
Length = 110
Score = 28.7 bits (61), Expect = 3.5
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +1
Query: 256 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFG 360
G + S W G A A VRGGG RSG G G
Sbjct: 76 GRRRSQPRWRGGAAAAEAD-VRGGGARRSGGGDEG 109
>05_03_0235 -
10747649-10748118,10748226-10748314,10748477-10748574,
10748934-10749046,10749107-10749200,10749557-10749589,
10749734-10749851,10750110-10750210,10751036-10751233,
10751337-10751471,10751752-10751830,10753650-10753738,
10753835-10753987,10754100-10754285
Length = 651
Score = 28.3 bits (60), Expect = 4.6
Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Frame = -2
Query: 427 DSDGANAXRASWGRTYVHHDTCYRRHPDRTYEYHHH---GHAEFGRQH 293
D D R GR + HH RH ++HHH GH + R H
Sbjct: 521 DDDYRARRRHQKGRHHRHHHDHRHRHGHSHGDHHHHYHGGHHQRRRHH 568
>02_04_0029 +
19036176-19036481,19036602-19036733,19036814-19036933,
19037763-19037837,19038282-19038392,19038528-19038635,
19038865-19038933,19038934-19039004,19039095-19039147,
19039223-19039326,19039424-19039696
Length = 473
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 424 SDGANAXRASWGRTYVHHDTCYRRHP 347
+DG N R + T VH+D Y RHP
Sbjct: 428 ADGVNIPRVTLLYTGVHYDILYPRHP 453
>02_03_0097 +
15166077-15166349,15166623-15166694,15166715-15167161,
15167579-15167794,15167873-15168213,15168329-15168947
Length = 655
Score = 28.3 bits (60), Expect = 4.6
Identities = 21/79 (26%), Positives = 33/79 (41%)
Frame = +1
Query: 334 HRSGQGAFGNMCRGGRMFXPTKPXRRWHRRCQPXDSGERPWPAAVAATGVPALVXAXRNI 513
H +G+ A G RG F TKP + W + Q + E A ++V A N+
Sbjct: 249 HTAGRTADGGRVRG---FQKTKPRQEWRAKNQVLVADEATADEAKRLAKGNSVVTASVNM 305
Query: 514 IEKIP*ASLGXXPAKVQEI 570
+ +P G A + E+
Sbjct: 306 VFTLP-TEFGIKQADIDEV 323
>10_01_0359 +
3956527-3956616,3957623-3957818,3958102-3959418,
3959482-3960445,3960588-3960648,3961500-3961946
Length = 1024
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -2
Query: 397 SWGRTYVHHDTCYRRHPDRTYEYHH 323
SWGR H D RR P R+ +HH
Sbjct: 303 SWGRD--HADNRLRRSPSRSSNFHH 325
>10_08_0213 - 15912048-15912716
Length = 222
Score = 27.5 bits (58), Expect = 8.1
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = +1
Query: 247 QGGGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG 378
QGGG+ S +G+GR + GGG + SG G G +GG
Sbjct: 160 QGGGYG-SGSGYGSGRGYGQGGGAYGGG-YASGGGGGGGGGQGG 201
>03_06_0646 +
35260497-35262371,35262500-35262683,35262906-35263007,
35263101-35263231,35263315-35263584,35263765-35263943,
35264229-35264275,35264452-35264541,35264596-35264645,
35264673-35264725,35264886-35265009,35265094-35265369,
35265460-35265593,35265672-35265758,35265864-35265977,
35266180-35266309
Length = 1281
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +2
Query: 197 DVHVSMSKNSRQPYCVSKEVVTKPVLNHGVL 289
DVH+ +++NSR Y ++K++V HGVL
Sbjct: 798 DVHIVLTENSRDRY-INKKLVAVGRDKHGVL 827
>03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657
Length = 390
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -2
Query: 349 PDRTYEYHHHGHAEFGRQHVQYPMIQH 269
P + +HHHGH G H Q QH
Sbjct: 33 PQEHHHHHHHGH--HGHHHEQQQQQQH 57
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,867,744
Number of Sequences: 37544
Number of extensions: 374042
Number of successful extensions: 1401
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1390
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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