Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060241.seq
(575 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0) 128 4e-30
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5) 33 0.13
SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.29
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45) 31 0.51
SB_9084| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_34202| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2) 29 2.7
SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95) 29 2.7
SB_25030| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8) 28 4.8
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_10758| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_8252| Best HMM Match : rve (HMM E-Value=0.13) 28 4.8
SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08) 28 6.3
SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29) 28 6.3
SB_14341| Best HMM Match : DUF1339 (HMM E-Value=4.4) 28 6.3
SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5) 28 6.3
SB_59069| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
SB_50530| Best HMM Match : Pencillinase_R (HMM E-Value=3.3) 27 8.3
>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
Length = 299
Score = 128 bits (308), Expect = 4e-30
Identities = 61/90 (67%), Positives = 69/90 (76%)
Frame = +1
Query: 256 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFXPTKPXRRWHRRCQPX 435
GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMF PTK R+WH +
Sbjct: 56 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRKWHTKVN-V 114
Query: 436 DSGERPWPAAVAATGVPALVXAXRNIIEKI 525
+A+AA+ +PAL+ A + IEKI
Sbjct: 115 QQRRFAVCSALAASALPALIMARGHRIEKI 144
Score = 64.5 bits (150), Expect = 6e-11
Identities = 30/54 (55%), Positives = 40/54 (74%)
Frame = +2
Query: 89 ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSK 250
ARP+++V++E E+ LP VFKAPIRPDLVN VH +++KN RQPY V+K
Sbjct: 2 ARPVITVFNENGESA--GQTTLPAVFKAPIRPDLVNFVHSNIAKNKRQPYAVNK 53
>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
Length = 612
Score = 33.5 bits (73), Expect = 0.13
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -2
Query: 376 HHDTCYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQHWF 263
HH CY H Y Y+ H H + R H YP +H++
Sbjct: 20 HHYCCYCHH---RYCYYRHHHYCWYRHHYHYPCYRHYY 54
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -2
Query: 382 YVHHDTCYRRHPDRTYEYHHHGH 314
Y HH CY RH + Y HH H
Sbjct: 25 YCHHRYCYYRHHHYCW-YRHHYH 46
>SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 511
Score = 32.3 bits (70), Expect = 0.29
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = -2
Query: 361 YRRHPDRTYEYHHHGHAEFGRQHVQYPMIQHWFGDHLLAHAVGLPRVLGHRNVNII 194
Y +HP T+ YHH H + ++ Q+P + H + H H + + + H+ + +I
Sbjct: 413 YHQHPQLTHRYHHQ-HPQVIHRYHQHPQVTHRY--HQQTHKLLIVIINTHKLLIVI 465
Score = 31.9 bits (69), Expect = 0.39
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -2
Query: 361 YRRHPDRTYEYHHHGHAEFGRQHVQYPMIQH 269
Y +HP T+ YH H R H Q+P + H
Sbjct: 232 YHQHPQVTHRYHQHPQVTH-RYHQQHPQVTH 261
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -2
Query: 352 HPDRTYEYHHHGHAEFGRQHVQYPMIQHWFGDH 254
HP T+ YH H R H Q+P + H + H
Sbjct: 406 HPQVTHRYHQHPQLTH-RYHHQHPQVIHRYHQH 437
Score = 27.5 bits (58), Expect = 8.3
Identities = 10/31 (32%), Positives = 14/31 (45%)
Frame = -2
Query: 361 YRRHPDRTYEYHHHGHAEFGRQHVQYPMIQH 269
Y +HP T+ YH R Q+P + H
Sbjct: 242 YHQHPQVTHRYHQQHPQVTHRYQYQHPQVTH 272
>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
Length = 453
Score = 31.5 bits (68), Expect = 0.51
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 376 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 293
HH RH R + +HHH H E+ R+H
Sbjct: 325 HHQRHRHRHRHR-HRHHHHHHHEYNRRH 351
>SB_9084| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 166
Score = 29.5 bits (63), Expect = 2.1
Identities = 10/36 (27%), Positives = 15/36 (41%)
Frame = -2
Query: 361 YRRHPDRTYEYHHHGHAEFGRQHVQYPMIQHWFGDH 254
+ H +++HHH H QH + H DH
Sbjct: 6 HHHHDHHHHDHHHHDHQHHDHQHHDHQHHDHHHHDH 41
>SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -2
Query: 385 TYVHHDTCYRRHPDRTYEYHHHGHA 311
TY H DT R+HPD H HA
Sbjct: 123 TYTHQDTQMRKHPDTQIYVHAPRHA 147
>SB_34202| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 717
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +1
Query: 187 PGQ*CSRFYVQELEAALLREQG-GGHQTSAESWGTGRAVARIPRVRGGGT 333
P Q C + E+ +L G GG+ AE G ARI +RG GT
Sbjct: 596 PAQPCKHLHSYTFESNILGNTGTGGYPGFAERGGRASYQARIQDLRGKGT 645
>SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)
Length = 694
Score = 29.1 bits (62), Expect = 2.7
Identities = 9/35 (25%), Positives = 14/35 (40%)
Frame = -2
Query: 388 RTYVHHDTCYRRHPDRTYEYHHHGHAEFGRQHVQY 284
R + HH + H + +HHH H H +
Sbjct: 209 RHHQHHQHHHHHHHQHNHHHHHHNHHHHHHHHYHH 243
>SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)
Length = 1080
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +1
Query: 265 TSAESWGTGRAVARIPR-VRGGGTHRSGQGAFGNMCRGGR 381
T +E +G ++ R PR RGGG G G G RGGR
Sbjct: 983 TPSEPSSSGSSIVRRPRRRRGGGGGGGGGGGGGGGRRGGR 1022
>SB_25030| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 113
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = -2
Query: 340 TYEYHHHGHAEFGRQHVQYPMI-QHWFGDHLLAHAVGLP-RVLGHRNVN 200
+Y++HHHG E Q V I + W L +H P RV+G ++
Sbjct: 21 SYQWHHHGTGETDDQPVTTTRITRTWVNRRLNSHRTIKPSRVIGRAQIH 69
>SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8)
Length = 193
Score = 28.3 bits (60), Expect = 4.8
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -2
Query: 376 HHDTCYRRHPDRTYEYHHH 320
HH YR H + Y +HHH
Sbjct: 96 HHHQHYRHHRHQHYRHHHH 114
>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3486
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -3
Query: 156 GRGLAAPCTVSLFSEYTDTKGRATDRLI 73
G+GL C+V+L S Y T+G+ RL+
Sbjct: 3163 GKGLTTWCSVNLDSVYLSTEGKEVYRLV 3190
>SB_10758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 845
Score = 28.3 bits (60), Expect = 4.8
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Frame = +2
Query: 65 SSEMSLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPY-- 238
S +M L R + Y+E ++ + LP V AP+ D+V +V S K S + Y
Sbjct: 475 SPQMPLDFPRSFLEDYAEACANLK---QSLPQVHLAPLASDIVREVESSEVKLSLKFYVS 531
Query: 239 --CVSKEVVTK 265
C S E V K
Sbjct: 532 ENCPSVEAVVK 542
>SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 736
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/45 (24%), Positives = 18/45 (40%)
Frame = -2
Query: 382 YVHHDTCYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQHWFGDHLL 248
Y HH + H +++HHH H H + H H++
Sbjct: 257 YHHHH--HHHHQHNHHQHHHHHHHHHHNHHHHHQQHHHHHHHHII 299
Score = 27.9 bits (59), Expect = 6.3
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = -2
Query: 364 CYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQH 269
CY + + + YHHH H H Q+ H
Sbjct: 246 CYHKLKNPRHRYHHHHHHHHQHNHHQHHHHHH 277
>SB_8252| Best HMM Match : rve (HMM E-Value=0.13)
Length = 264
Score = 28.3 bits (60), Expect = 4.8
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -2
Query: 382 YVHHDTCYRRHPDRTYEYHHHGH 314
Y HH +RR R + +HHH H
Sbjct: 233 YHHHHHHHRRRRRRRHHHHHHHH 255
>SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08)
Length = 839
Score = 27.9 bits (59), Expect = 6.3
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -2
Query: 376 HHDTCYRRHPDRTYEYHHH 320
HH + RH R + YHHH
Sbjct: 570 HHHLHHHRHHHRHHHYHHH 588
>SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29)
Length = 1779
Score = 27.9 bits (59), Expect = 6.3
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -2
Query: 376 HHDTCYRRHPDRTYEYHHHGH 314
HH + RH DR + + HH H
Sbjct: 340 HHRNKHYRHHDRNHHHRHHHH 360
>SB_14341| Best HMM Match : DUF1339 (HMM E-Value=4.4)
Length = 801
Score = 27.9 bits (59), Expect = 6.3
Identities = 26/84 (30%), Positives = 29/84 (34%), Gaps = 2/84 (2%)
Frame = +1
Query: 244 EQGGGHQTSAESWGTGRAVARIPRVRGGGTHRS-GQGAFG-NMCRGGRMFXPTKPXRRWH 417
E G G + W T R VA RVR G R QGA G + GR +P
Sbjct: 258 EGGRGVREGLGYWATARVVAGRKRVRATGPRRGWSQGARGLGLLGHGRADIEPRPC---- 313
Query: 418 RRCQPXDSGERPWPAAVAATGVPA 489
C P W A T A
Sbjct: 314 -ACAPRHRAATTWFRAAGPTTATA 336
>SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5)
Length = 237
Score = 27.9 bits (59), Expect = 6.3
Identities = 10/36 (27%), Positives = 16/36 (44%)
Frame = -2
Query: 361 YRRHPDRTYEYHHHGHAEFGRQHVQYPMIQHWFGDH 254
+R+H +R +HHH H +P H+ H
Sbjct: 190 HRQHYNRHRRHHHHHRHRHHHHHPNHPYSHHYPNHH 225
>SB_59069| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 664
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = -2
Query: 385 TYVHHDTCYRRHPDRTYEYHHHGHA 311
TY H DT +HPD H HA
Sbjct: 323 TYTHQDTQMHKHPDTQMYVHAPRHA 347
>SB_50530| Best HMM Match : Pencillinase_R (HMM E-Value=3.3)
Length = 356
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Frame = -2
Query: 382 YVHHDTCYRRHPDRTYEYHHHGHAEFGRQ-HVQYPMIQHWFGDH 254
Y H+D Y H Y+YH+H + H Y H+ D+
Sbjct: 299 YYHYDYYYHYHYYYYYDYHYHYDYHYHYDYHYDYHYDYHYHYDY 342
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,741,959
Number of Sequences: 59808
Number of extensions: 353034
Number of successful extensions: 4153
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 3913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4091
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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