Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060241.seq
(575 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X13382-1|CAA31759.1| 407|Drosophila melanogaster protein ( Dros... 134 6e-32
BT025959-1|ABG02203.1| 233|Drosophila melanogaster IP15855p pro... 134 6e-32
AY069485-1|AAL39630.1| 401|Drosophila melanogaster LD21756p pro... 134 6e-32
AE014297-4196|AAG22173.1| 401|Drosophila melanogaster CG5502-PA... 134 6e-32
X06881-1|CAA29998.1| 123|Drosophila melanogaster protein ( Dros... 133 1e-31
AY122259-1|AAM52771.1| 2176|Drosophila melanogaster SD09011p pro... 33 0.37
AL009192-2|CAA15686.1| 2342|Drosophila melanogaster EG:133E12.4 ... 33 0.37
AF242291-1|AAF63753.1| 2362|Drosophila melanogaster nuclear prot... 33 0.37
AE014298-308|AAF45704.2| 2301|Drosophila melanogaster CG4399-PB ... 33 0.37
AY113210-1|AAM29215.1| 872|Drosophila melanogaster AT06220p pro... 31 1.5
AE014296-2188|AAF49882.2| 271|Drosophila melanogaster CG17666-P... 31 1.5
AE014296-2187|AAN11857.1| 872|Drosophila melanogaster CG17666-P... 31 1.5
BT029095-1|ABJ17028.1| 554|Drosophila melanogaster IP13321p pro... 30 2.6
AE014298-745|AAF46035.1| 554|Drosophila melanogaster CG15784-PA... 30 2.6
BT021357-1|AAX33505.1| 1953|Drosophila melanogaster LP14866p pro... 29 3.4
AE014298-1786|AAF48179.2| 2528|Drosophila melanogaster CG32654-P... 29 3.4
X05285-1|CAA28903.1| 147|Drosophila melanogaster fibrillarin pr... 29 4.5
AE013599-3536|AAF46950.1| 344|Drosophila melanogaster CG9888-PA... 29 4.5
>X13382-1|CAA31759.1| 407|Drosophila melanogaster protein (
Drosophila melanogastermRNA for put. ribosomal protein
L1. ).
Length = 407
Score = 134 bits (325), Expect = 6e-32
Identities = 62/90 (68%), Positives = 72/90 (80%)
Frame = +1
Query: 256 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFXPTKPXRRWHRRCQPX 435
GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMF PTK RRWHR+
Sbjct: 62 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTFRRWHRKVN-V 120
Query: 436 DSGERPWPAAVAATGVPALVXAXRNIIEKI 525
+ +A+AA+GVPALV + ++I+ +
Sbjct: 121 NQRRYALVSAIAASGVPALVQSKGHVIDGV 150
Score = 72.1 bits (169), Expect = 5e-13
Identities = 35/59 (59%), Positives = 44/59 (74%)
Frame = +2
Query: 74 MSLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSK 250
MSL ARPLVSVY+EK+E + LP VFKAPIRPD+VN+VH + +N+RQ Y VS+
Sbjct: 1 MSLGNARPLVSVYTEKNEPAKDKNICLPAVFKAPIRPDVVNEVHQLLRRNNRQAYAVSE 59
>BT025959-1|ABG02203.1| 233|Drosophila melanogaster IP15855p
protein.
Length = 233
Score = 134 bits (325), Expect = 6e-32
Identities = 62/90 (68%), Positives = 72/90 (80%)
Frame = +1
Query: 256 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFXPTKPXRRWHRRCQPX 435
GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMF PTK RRWHR+
Sbjct: 62 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTFRRWHRKVN-V 120
Query: 436 DSGERPWPAAVAATGVPALVXAXRNIIEKI 525
+ +A+AA+GVPALV + ++I+ +
Sbjct: 121 NQRRYALVSAIAASGVPALVQSKGHVIDGV 150
Score = 72.1 bits (169), Expect = 5e-13
Identities = 35/59 (59%), Positives = 44/59 (74%)
Frame = +2
Query: 74 MSLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSK 250
MSL ARPLVSVY+EK+E + LP VFKAPIRPD+VN+VH + +N+RQ Y VS+
Sbjct: 1 MSLGNARPLVSVYTEKNEPAKDKNICLPAVFKAPIRPDVVNEVHQLLRRNNRQAYAVSE 59
>AY069485-1|AAL39630.1| 401|Drosophila melanogaster LD21756p
protein.
Length = 401
Score = 134 bits (325), Expect = 6e-32
Identities = 62/90 (68%), Positives = 72/90 (80%)
Frame = +1
Query: 256 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFXPTKPXRRWHRRCQPX 435
GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMF PTK RRWHR+
Sbjct: 62 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTFRRWHRKVN-V 120
Query: 436 DSGERPWPAAVAATGVPALVXAXRNIIEKI 525
+ +A+AA+GVPALV + ++I+ +
Sbjct: 121 NQRRYALVSAIAASGVPALVQSKGHVIDGV 150
Score = 72.1 bits (169), Expect = 5e-13
Identities = 35/59 (59%), Positives = 44/59 (74%)
Frame = +2
Query: 74 MSLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSK 250
MSL ARPLVSVY+EK+E + LP VFKAPIRPD+VN+VH + +N+RQ Y VS+
Sbjct: 1 MSLGNARPLVSVYTEKNEPAKDKNICLPAVFKAPIRPDVVNEVHQLLRRNNRQAYAVSE 59
>AE014297-4196|AAG22173.1| 401|Drosophila melanogaster CG5502-PA
protein.
Length = 401
Score = 134 bits (325), Expect = 6e-32
Identities = 62/90 (68%), Positives = 72/90 (80%)
Frame = +1
Query: 256 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFXPTKPXRRWHRRCQPX 435
GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMF PTK RRWHR+
Sbjct: 62 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTFRRWHRKVN-V 120
Query: 436 DSGERPWPAAVAATGVPALVXAXRNIIEKI 525
+ +A+AA+GVPALV + ++I+ +
Sbjct: 121 NQRRYALVSAIAASGVPALVQSKGHVIDGV 150
Score = 72.1 bits (169), Expect = 5e-13
Identities = 35/59 (59%), Positives = 44/59 (74%)
Frame = +2
Query: 74 MSLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSK 250
MSL ARPLVSVY+EK+E + LP VFKAPIRPD+VN+VH + +N+RQ Y VS+
Sbjct: 1 MSLGNARPLVSVYTEKNEPAKDKNICLPAVFKAPIRPDVVNEVHQLLRRNNRQAYAVSE 59
>X06881-1|CAA29998.1| 123|Drosophila melanogaster protein (
Drosophila gene forribosomal protein L1 fragment. ).
Length = 123
Score = 133 bits (322), Expect = 1e-31
Identities = 62/89 (69%), Positives = 71/89 (79%)
Frame = +1
Query: 259 HQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFXPTKPXRRWHRRCQPXD 438
HQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMF PTK RRWHRR +
Sbjct: 1 HQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTFRRWHRRVN-VN 59
Query: 439 SGERPWPAAVAATGVPALVXAXRNIIEKI 525
+A+AA+GVPALV + ++I+ +
Sbjct: 60 QRRYALVSAIAASGVPALVQSKGHVIDGV 88
>AY122259-1|AAM52771.1| 2176|Drosophila melanogaster SD09011p protein.
Length = 2176
Score = 32.7 bits (71), Expect = 0.37
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +1
Query: 247 QGGGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG 378
+GGG T ES GT + V ++ R GG SG G + GG
Sbjct: 918 RGGGSATHVESSGTLKTVIKLNRSSNGGVSGSGGLPTGTVIHGG 961
>AL009192-2|CAA15686.1| 2342|Drosophila melanogaster EG:133E12.4
protein.
Length = 2342
Score = 32.7 bits (71), Expect = 0.37
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +1
Query: 247 QGGGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG 378
+GGG T ES GT + V ++ R GG SG G + GG
Sbjct: 1042 RGGGSATHVESSGTLKTVIKLNRSSNGGVSGSGGLPTGTVIHGG 1085
>AF242291-1|AAF63753.1| 2362|Drosophila melanogaster nuclear protein
EAST protein.
Length = 2362
Score = 32.7 bits (71), Expect = 0.37
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +1
Query: 247 QGGGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG 378
+GGG T ES GT + V ++ R GG SG G + GG
Sbjct: 1095 RGGGSATHVESSGTLKTVIKLNRSSNGGVSGSGGLPTGTVIHGG 1138
>AE014298-308|AAF45704.2| 2301|Drosophila melanogaster CG4399-PB
protein.
Length = 2301
Score = 32.7 bits (71), Expect = 0.37
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +1
Query: 247 QGGGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG 378
+GGG T ES GT + V ++ R GG SG G + GG
Sbjct: 1042 RGGGSATHVESSGTLKTVIKLNRSSNGGVSGSGGLPTGTVIHGG 1085
>AY113210-1|AAM29215.1| 872|Drosophila melanogaster AT06220p
protein.
Length = 872
Score = 30.7 bits (66), Expect = 1.5
Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Frame = +3
Query: 291 TCCRP-NSACPWWWYS*VRSGC 353
TCC P ++ CPW WY +GC
Sbjct: 718 TCCMPCSNQCPWSWYYNPCTGC 739
>AE014296-2188|AAF49882.2| 271|Drosophila melanogaster CG17666-PB,
isoform B protein.
Length = 271
Score = 30.7 bits (66), Expect = 1.5
Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Frame = +3
Query: 291 TCCRP-NSACPWWWYS*VRSGC 353
TCC P ++ CPW WY +GC
Sbjct: 117 TCCMPCSNQCPWSWYYNPCTGC 138
>AE014296-2187|AAN11857.1| 872|Drosophila melanogaster CG17666-PA,
isoform A protein.
Length = 872
Score = 30.7 bits (66), Expect = 1.5
Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Frame = +3
Query: 291 TCCRP-NSACPWWWYS*VRSGC 353
TCC P ++ CPW WY +GC
Sbjct: 718 TCCMPCSNQCPWSWYYNPCTGC 739
>BT029095-1|ABJ17028.1| 554|Drosophila melanogaster IP13321p
protein.
Length = 554
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Frame = -2
Query: 328 HHHG-HAEFGRQHVQYPMIQHW---FGDHLLAHA 239
HHHG H GR H +P H+ FG H HA
Sbjct: 207 HHHGRHGHHGRPHHHHPHGHHFGPHFGPHFGPHA 240
>AE014298-745|AAF46035.1| 554|Drosophila melanogaster CG15784-PA
protein.
Length = 554
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Frame = -2
Query: 328 HHHG-HAEFGRQHVQYPMIQHW---FGDHLLAHA 239
HHHG H GR H +P H+ FG H HA
Sbjct: 207 HHHGRHGHHGRPHHHHPHGHHFGPHFGPHFGPHA 240
>BT021357-1|AAX33505.1| 1953|Drosophila melanogaster LP14866p
protein.
Length = 1953
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +1
Query: 79 SIGSPTFSVGVFREE*DGAGCSQAPPVRVQG--AHPSGPG 192
++GSP ++VG G G S APP V AH +G G
Sbjct: 287 AVGSPIYAVGASSAHSAGVGASPAPPTGVVAPPAHLAGIG 326
>AE014298-1786|AAF48179.2| 2528|Drosophila melanogaster CG32654-PC
protein.
Length = 2528
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +1
Query: 79 SIGSPTFSVGVFREE*DGAGCSQAPPVRVQG--AHPSGPG 192
++GSP ++VG G G S APP V AH +G G
Sbjct: 287 AVGSPIYAVGASSAHSAGVGASPAPPTGVVAPPAHLAGIG 326
>X05285-1|CAA28903.1| 147|Drosophila melanogaster fibrillarin
protein.
Length = 147
Score = 29.1 bits (62), Expect = 4.5
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = +1
Query: 250 GGGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG 378
GGG + G G R RGGG R G+G FG GG
Sbjct: 26 GGGFRGRGGGGGGGGGGFGGGRGRGGGGDRGGRGGFGGGRGGG 68
>AE013599-3536|AAF46950.1| 344|Drosophila melanogaster CG9888-PA
protein.
Length = 344
Score = 29.1 bits (62), Expect = 4.5
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = +1
Query: 250 GGGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG 378
GGG + G G R RGGG R G+G FG GG
Sbjct: 19 GGGFRGRGGGGGGGGGGFGGGRGRGGGGDRGGRGGFGGGRGGG 61
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,073,337
Number of Sequences: 53049
Number of extensions: 584959
Number of successful extensions: 3460
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 2345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3305
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2276053890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -