Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060241.seq
         (575 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   122   1e-28
Z78061-1|CAB01494.1|  658|Caenorhabditis elegans Hypothetical pr...    30   1.0  
U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical pr...    29   3.1  
U23523-7|AAC46562.2|   85|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AL132949-40|CAN99706.1|  329|Caenorhabditis elegans Hypothetical...    28   4.1  
AL132949-39|CAB61094.1|  295|Caenorhabditis elegans Hypothetical...    28   4.1  
AL132949-31|CAB61110.3|  297|Caenorhabditis elegans Hypothetical...    28   5.5  
AF002197-3|AAD34660.1| 1451|Caenorhabditis elegans Notch signali...    28   5.5  
Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr...    27   7.2  
AL117204-20|CAB55136.2|  699|Caenorhabditis elegans Hypothetical...    27   7.2  
AJ243905-1|CAB64866.1|  699|Caenorhabditis elegans SF1 protein p...    27   7.2  
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    27   9.5  
AL032655-9|CAA21725.3|  339|Caenorhabditis elegans Hypothetical ...    27   9.5  
AL032655-8|CAH60799.1|  348|Caenorhabditis elegans Hypothetical ...    27   9.5  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  122 bits (295), Expect = 1e-28
 Identities = 57/90 (63%), Positives = 67/90 (74%)
 Frame = +1

Query: 256 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFXPTKPXRRWHRRCQPX 435
           G Q SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG MF P K  RRWHR     
Sbjct: 58  GKQHSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIA 117

Query: 436 DSGERPWPAAVAATGVPALVXAXRNIIEKI 525
                   +A+AA+G+PAL+ A  ++I+++
Sbjct: 118 QK-RYAVSSAIAASGIPALLQARGHVIDQV 146



 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 26/53 (49%), Positives = 35/53 (66%)
 Frame = +2

Query: 89  ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS 247
           ARPLV+VY EK E  Q   + LP VF+ PIRPDLV+ +   + +N RQ + V+
Sbjct: 3   ARPLVTVYDEKYEATQSQIR-LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVN 54


>Z78061-1|CAB01494.1|  658|Caenorhabditis elegans Hypothetical
           protein C48G7.1 protein.
          Length = 658

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = +2

Query: 173 PIRPDLVNDVHVSMSKNSRQPYCVSKEVVTKPVLNHGVLDVLS 301
           P + D ++DVH+S S    Q     K V   P L H     LS
Sbjct: 205 PSKHDRLDDVHISRSDRRSQSVRSHKSVTASPKLGHSTSSTLS 247


>U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical
           protein F53A9.9 protein.
          Length = 147

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 376 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 293
           HHD  +++H  + ++ HHHGH   G  H
Sbjct: 120 HHDGHHKKHGRKEHD-HHHGH-HHGHHH 145


>U23523-7|AAC46562.2|   85|Caenorhabditis elegans Hypothetical
           protein F53A9.7 protein.
          Length = 85

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/51 (31%), Positives = 21/51 (41%)
 Frame = -2

Query: 385 TYVHHDTCYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQHWFGDHLLAHAVG 233
           T VH D  +  H D     HHH  +  G  H  +  +QH+   H   H  G
Sbjct: 34  TVVHTDGGHHGHVDT----HHHEESHHGEHHGGHHGVQHYESHHESHHHGG 80


>AL132949-40|CAN99706.1|  329|Caenorhabditis elegans Hypothetical
           protein Y53F4B.39b protein.
          Length = 329

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 295 HVQYPMIQHWFGDHL 251
           H++Y +I HW GDH+
Sbjct: 105 HIEYIVITHWHGDHV 119


>AL132949-39|CAB61094.1|  295|Caenorhabditis elegans Hypothetical
           protein Y53F4B.39a protein.
          Length = 295

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 295 HVQYPMIQHWFGDHL 251
           H++Y +I HW GDH+
Sbjct: 71  HIEYIVITHWHGDHV 85


>AL132949-31|CAB61110.3|  297|Caenorhabditis elegans Hypothetical
           protein Y53F4B.36 protein.
          Length = 297

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 17/79 (21%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
 Frame = +2

Query: 74  MSLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV-SK 250
           MS++V  P +S        V    + + F++  P    ++ D H+   + +    CV S 
Sbjct: 182 MSMAVTSPYLSKLDRLPIVVSACKRAMCFIYDRPTNSIILLDTHMHFKRRAVSVLCVASF 241

Query: 251 EVVTKPVLNHGVLDVLSPE 307
           E +T  +++  V +++ P+
Sbjct: 242 EEITDFIVS--VTEIVFPK 258


>AF002197-3|AAD34660.1| 1451|Caenorhabditis elegans Notch signaling
           pathway homologprotein 1 protein.
          Length = 1451

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 25/82 (30%), Positives = 35/82 (42%)
 Frame = +1

Query: 88  SPTFSVGVFREE*DGAGCSQAPPVRVQGAHPSGPGQ*CSRFYVQELEAALLREQGGGHQT 267
           SPT +  V + +  GAG  QA  ++ Q + PSG G            A L R  GGG+  
Sbjct: 85  SPTTNGMVIQAKTPGAGVIQARHMQSQQSFPSG-GPARVLMNRSSTNAGLSRMVGGGYDQ 143

Query: 268 SAESWGTGRAVARIPRVRGGGT 333
              +   GR +     VR  G+
Sbjct: 144 QLPTAPNGRLMIPSTAVRVPGS 165


>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical protein
            F54B3.1b protein.
          Length = 3394

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -3

Query: 528  GNLFNNVPXS-LNERWDAGSSNGCRPRXLSAVRRLTATVPT 409
            GN   NVP S + ERWD+G+  G  P   +       T P+
Sbjct: 1228 GNGIVNVPMSDVPERWDSGARFGWTPNNRNVFPEEATTFPS 1268


>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical protein
            F54B3.1a protein.
          Length = 3396

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -3

Query: 528  GNLFNNVPXS-LNERWDAGSSNGCRPRXLSAVRRLTATVPT 409
            GN   NVP S + ERWD+G+  G  P   +       T P+
Sbjct: 1228 GNGIVNVPMSDVPERWDSGARFGWTPNNRNVFPEEATTFPS 1268


>AL117204-20|CAB55136.2|  699|Caenorhabditis elegans Hypothetical
           protein Y116A8C.32 protein.
          Length = 699

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 17/43 (39%), Positives = 17/43 (39%)
 Frame = +1

Query: 250 GGGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG 378
           GGGH  SA   G            GGG    G GA G   RGG
Sbjct: 506 GGGHVASAGG-GISAMTGAGGEAPGGGAGGRGGGAHGGAGRGG 547


>AJ243905-1|CAB64866.1|  699|Caenorhabditis elegans SF1 protein
           protein.
          Length = 699

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 17/43 (39%), Positives = 17/43 (39%)
 Frame = +1

Query: 250 GGGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG 378
           GGGH  SA   G            GGG    G GA G   RGG
Sbjct: 506 GGGHVASAGG-GISAMTGAGGEAPGGGAGGRGGGAHGGAGRGG 547


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -2

Query: 376 HHDTCYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQHWFGDHLLAH 242
           HH   +  H D+   +HHHGH      H ++   QH    H  +H
Sbjct: 698 HHGAHHGHHDDKE-NHHHHGH------HSKHSKKQHTKKSHKKSH 735


>AL032655-9|CAA21725.3|  339|Caenorhabditis elegans Hypothetical
           protein Y6B3B.5a protein.
          Length = 339

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = +2

Query: 428 NLRTAESXL---GRQPLLLPASQRSXRLXGTLLKRFPELPLVXXPQRSKRS 571
           NL  A   L   G++ LL  A   S  L   +L+RFP+L +V   ++S+ S
Sbjct: 67  NLNAAAKGLTDEGKEELLTRADLISNHLILDILQRFPQLQIVSEEKKSEFS 117


>AL032655-8|CAH60799.1|  348|Caenorhabditis elegans Hypothetical
           protein Y6B3B.5b protein.
          Length = 348

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = +2

Query: 428 NLRTAESXL---GRQPLLLPASQRSXRLXGTLLKRFPELPLVXXPQRSKRS 571
           NL  A   L   G++ LL  A   S  L   +L+RFP+L +V   ++S+ S
Sbjct: 76  NLNAAAKGLTDEGKEELLTRADLISNHLILDILQRFPQLQIVSEEKKSEFS 126


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,009,369
Number of Sequences: 27780
Number of extensions: 254128
Number of successful extensions: 788
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)