Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060241.seq
(575 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S... 130 6e-31
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str... 130 6e-31
At1g76010.1 68414.m08825 expressed protein 30 1.3
At1g57750.1 68414.m06552 cytochrome P450, putative similar to cy... 29 1.7
At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp... 29 2.2
At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp... 29 2.2
At2g05520.1 68415.m00584 glycine-rich protein (GRP) identical to... 29 2.2
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 29 2.9
At3g04640.1 68416.m00497 glycine-rich protein predicted proteins... 29 2.9
At1g48410.2 68414.m05409 argonaute protein (AGO1) identical to S... 29 2.9
At1g48410.1 68414.m05408 argonaute protein (AGO1) identical to S... 29 2.9
At4g39480.1 68417.m05585 cytochrome P450 family protein contains... 28 3.9
At5g17650.1 68418.m02069 glycine/proline-rich protein glycine/pr... 28 5.1
At3g12430.1 68416.m01548 expressed protein ; expression supporte... 28 5.1
At2g42200.2 68415.m05223 squamosa promoter-binding protein-like ... 27 6.8
At2g42200.1 68415.m05222 squamosa promoter-binding protein-like ... 27 6.8
At1g80480.1 68414.m09427 PRLI-interacting factor L, putative sim... 27 6.8
At1g10340.1 68414.m01164 ankyrin repeat family protein contains ... 27 6.8
At4g29230.1 68417.m04181 no apical meristem (NAM) family protein... 27 9.0
>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
roibosomal protein L4, Arabidopsis thaliana,
EMBL:CAA79104
Length = 407
Score = 130 bits (314), Expect = 6e-31
Identities = 62/91 (68%), Positives = 69/91 (75%)
Frame = +1
Query: 256 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFXPTKPXRRWHRRCQPX 435
GHQTSAESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRGGRMF PTK RRWHRR
Sbjct: 65 GHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVN-V 123
Query: 436 DSGERPWPAAVAATGVPALVXAXRNIIEKIP 528
+ +A+AAT VPALV A + IE +P
Sbjct: 124 NMKRHAIVSAIAATAVPALVMARGHKIENVP 154
Score = 58.4 bits (135), Expect = 3e-09
Identities = 30/59 (50%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Frame = +2
Query: 83 SVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKE 253
+ ARPLV+V + T Q LP V AP+RPD+VN VH +S NSRQPY VSK+
Sbjct: 5 AAARPLVTVQGLDGDMSTDQSTTVTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKK 63
>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
similarity to 60S ribosomal protein L1 GB:P49691
Length = 406
Score = 130 bits (314), Expect = 6e-31
Identities = 62/91 (68%), Positives = 69/91 (75%)
Frame = +1
Query: 256 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFXPTKPXRRWHRRCQPX 435
GHQTSAESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRGGRMF PTK RRWHRR
Sbjct: 64 GHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVN-V 122
Query: 436 DSGERPWPAAVAATGVPALVXAXRNIIEKIP 528
+ +A+AAT VPALV A + IE +P
Sbjct: 123 NMKRHAIVSAIAATAVPALVMARGHKIENVP 153
Score = 60.5 bits (140), Expect = 8e-10
Identities = 30/62 (48%), Positives = 41/62 (66%), Gaps = 2/62 (3%)
Frame = +2
Query: 74 MSLSVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS 247
M+ + ARPLV++ + + T Q + LP V AP+RPD+VN VH +S NSRQPY VS
Sbjct: 1 MAAAAARPLVTIQTLDGDMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVS 60
Query: 248 KE 253
K+
Sbjct: 61 KK 62
>At1g76010.1 68414.m08825 expressed protein
Length = 350
Score = 29.9 bits (64), Expect = 1.3
Identities = 18/43 (41%), Positives = 19/43 (44%)
Frame = +1
Query: 247 QGGGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRG 375
QG G + G GR R R RGGG R G G F N G
Sbjct: 303 QGRGGYDGPQGRGRGRGRGRGGRGRGGG--RGGDGGFNNRSDG 343
>At1g57750.1 68414.m06552 cytochrome P450, putative similar to
cytochrome P450 GI:4688670 from [Catharanthus roseus]
Length = 497
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +2
Query: 98 LVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 244
LV +++ SE+++ PLPF K+P +PD++ H + NS+ C+
Sbjct: 351 LVYLHAALSESMR-LYPPLPFNHKSPAKPDVLPSGH-KVDANSKIVICI 397
>At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam domain PF01805:
Surp module
Length = 844
Score = 29.1 bits (62), Expect = 2.2
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -2
Query: 388 RTYVHHDTCYRRHPDRTY-EYHHHGHAEFGRQHVQYPMIQH 269
R++ H + +H D + E+HHH H R+H ++H
Sbjct: 735 RSHHHRSRKHEKHRDSSDDEHHHHRHRSSRRKHEDSSDVEH 775
>At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam domain PF01805:
Surp module
Length = 843
Score = 29.1 bits (62), Expect = 2.2
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -2
Query: 388 RTYVHHDTCYRRHPDRTY-EYHHHGHAEFGRQHVQYPMIQH 269
R++ H + +H D + E+HHH H R+H ++H
Sbjct: 735 RSHHHRSRKHEKHRDSSDDEHHHHRHRSSRRKHEDSSDVEH 775
>At2g05520.1 68415.m00584 glycine-rich protein (GRP) identical to
glycine-rich protein; atGRP (GI:259447) [Arabidopsis
thaliana]
Length = 145
Score = 29.1 bits (62), Expect = 2.2
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +1
Query: 247 QGGGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG 378
QGGG + G GR R +GGG + G G+ G+ CR G
Sbjct: 79 QGGGGRYQG---GGGRYQGGGGRYQGGGGRQGGGGSGGSYCRHG 119
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 28.7 bits (61), Expect = 2.9
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +1
Query: 241 REQGGGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFG 360
R GGG+ S+ +G GR+ R G + RSG G+FG
Sbjct: 512 RSGGGGYGGSSGGYGGGRSGGSSNRY-SGDSDRSGFGSFG 550
>At3g04640.1 68416.m00497 glycine-rich protein predicted proteins,
Arabidopsis thaliana
Length = 159
Score = 28.7 bits (61), Expect = 2.9
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = +1
Query: 247 QGGGHQTSAESWGT---GRAVARIPRVRGGGTHRSGQGAFG 360
+GGG +S G+ G + IP + GGGTHRSG + G
Sbjct: 99 RGGGGSSSRGGGGSSSRGGGLRPIP-IYGGGTHRSGHHSSG 138
>At1g48410.2 68414.m05409 argonaute protein (AGO1) identical to
SP|O04379 Argonaute protein (AGO1) {Arabidopsis
thaliana}; contains Pfam profiles PF02171: Piwi domain,
PF02170: PAZ domain
Length = 1050
Score = 28.7 bits (61), Expect = 2.9
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 247 QGGGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 381
+G G + + G GR R +GGG H+ G+G +GGR
Sbjct: 15 EGSGSREAGPVSGGGRGSQRGGFQQGGGQHQGGRGYTPQPQQGGR 59
>At1g48410.1 68414.m05408 argonaute protein (AGO1) identical to
SP|O04379 Argonaute protein (AGO1) {Arabidopsis
thaliana}; contains Pfam profiles PF02171: Piwi domain,
PF02170: PAZ domain
Length = 1048
Score = 28.7 bits (61), Expect = 2.9
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 247 QGGGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 381
+G G + + G GR R +GGG H+ G+G +GGR
Sbjct: 15 EGSGSREAGPVSGGGRGSQRGGFQQGGGQHQGGRGYTPQPQQGGR 59
>At4g39480.1 68417.m05585 cytochrome P450 family protein contains
Pfam profile: PF00067 cytochrome P450
Length = 989
Score = 28.3 bits (60), Expect = 3.9
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 149 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 244
P+PF K+P +PD++ H + NSR +C+
Sbjct: 384 PVPFNHKSPAKPDVLPSGH-KVKANSRILFCL 414
Score = 27.5 bits (58), Expect = 6.8
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 149 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 244
P+PF K+P +PD++ H + NS+ +C+
Sbjct: 857 PVPFQHKSPTKPDVLPSGH-KVDANSKILFCL 887
>At5g17650.1 68418.m02069 glycine/proline-rich protein
glycine/proline-rich protein GPRP - Arabidopsis
thaliana, EMBL:X84315
Length = 173
Score = 27.9 bits (59), Expect = 5.1
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -2
Query: 376 HHDTCYRRHPDRTYEYHHHGHAEF 305
HH Y H Y Y +HGH +F
Sbjct: 122 HHHGHYGHHHGHGYGYGYHGHGKF 145
>At3g12430.1 68416.m01548 expressed protein ; expression supported
by MPSS
Length = 238
Score = 27.9 bits (59), Expect = 5.1
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -1
Query: 152 GAWLHPAPSHSSLNTPTLKVGLPID--SFRYFSEAIPLKY 39
G W+H SH+ ++ L VG+ + Y+S + P++Y
Sbjct: 38 GQWIHDVLSHNRFSSHPLVVGVGVQWTPSSYYSASSPVRY 77
>At2g42200.2 68415.m05223 squamosa promoter-binding protein-like 9
(SPL9) identical to squamosa promoter binding
protein-like 9 [Arabidopsis thaliana] GI:5931673;
contains Pfam profile PF03110: SBP domain
Length = 369
Score = 27.5 bits (58), Expect = 6.8
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = +1
Query: 244 EQGGGHQTSAESWGTGRAVARIPRVRGGGTHRSGQ 348
E GGG S+ S G RVRGGG+ +SGQ
Sbjct: 41 EDGGGGSGSSSSGGRSNR-----RVRGGGSGQSGQ 70
>At2g42200.1 68415.m05222 squamosa promoter-binding protein-like 9
(SPL9) identical to squamosa promoter binding
protein-like 9 [Arabidopsis thaliana] GI:5931673;
contains Pfam profile PF03110: SBP domain
Length = 375
Score = 27.5 bits (58), Expect = 6.8
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = +1
Query: 244 EQGGGHQTSAESWGTGRAVARIPRVRGGGTHRSGQ 348
E GGG S+ S G RVRGGG+ +SGQ
Sbjct: 41 EDGGGGSGSSSSGGRSNR-----RVRGGGSGQSGQ 70
>At1g80480.1 68414.m09427 PRLI-interacting factor L, putative
similar to PRLI-interacting factor L [Arabidopsis
thaliana] GI:11139268; contains Pfam profile PF02492:
Cobalamin synthesis protein/P47K
Length = 444
Score = 27.5 bits (58), Expect = 6.8
Identities = 9/28 (32%), Positives = 13/28 (46%)
Frame = -2
Query: 376 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 293
HHD + H D +++ HH H H
Sbjct: 311 HHDHDHDHHHDHNHDHDHHHHDGHDHHH 338
>At1g10340.1 68414.m01164 ankyrin repeat family protein contains
ankyrin repeat domains, Pfam:PF00023
Length = 578
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 452 LGRQPLLLPASQRSXRLXGTLLKRFPEL 535
+G L+L S S + GT+L+RFP+L
Sbjct: 131 IGLGELILAISSGSTSIVGTILERFPDL 158
>At4g29230.1 68417.m04181 no apical meristem (NAM) family protein
similar to NAM family proteins GP|12751304|,
GP|6223650|, GP|9758909 - Arabidopsis
thaliana,PIR2:T04621
Length = 498
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/49 (24%), Positives = 26/49 (53%)
Frame = -2
Query: 337 YEYHHHGHAEFGRQHVQYPMIQHWFGDHLLAHAVGLPRVLGHRNVNIID 191
+++HHH H + ++H + + Q H ++ + L H ++NI+D
Sbjct: 359 HDHHHHHHQQQQQRHHAFNISQ---PTHPISTIISPSTSLHHASINILD 404
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,648,455
Number of Sequences: 28952
Number of extensions: 245497
Number of successful extensions: 768
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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