Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060240.seq
         (671 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    43   3e-06
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      25   0.43 
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      25   0.43 
AJ850290-1|CAH64510.1|  533|Tribolium castaneum putative esteras...    24   1.3  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    24   1.3  
AJ850291-1|CAH64511.1|  533|Tribolium castaneum putative esteras...    23   3.0  
AJ850289-1|CAH64509.1|  533|Tribolium castaneum putative esteras...    23   3.0  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   5.3  
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    22   5.3  
AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cogna...    21   6.9  
AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock prote...    21   6.9  
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    21   6.9  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   9.2  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 42.7 bits (96), Expect = 3e-06
 Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 4/107 (3%)
 Frame = +3

Query: 360 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSERI*LA*PK- 536
           EV V+G +   PI  FE +    ++ + VK  GY +PT IQ    P+ +S R  ++  + 
Sbjct: 145 EVKVTGNDAPPPITSFETSGLRPHLLENVKKSGYTKPTAIQKYAIPVILSGRDLMSCAQT 204

Query: 537 ---RVPAKRWPTSCQQLCT*ITNRLFGEVMVPIALVLAPTRELAQQI 668
              +  A   P     L              P+ ++++PTRELA QI
Sbjct: 205 GSGKTAAFMLPIIHNLLSDKNPPNTENNCAQPVVVIMSPTRELAIQI 251



 Score = 34.7 bits (76), Expect = 7e-04
 Identities = 16/33 (48%), Positives = 24/33 (72%), Gaps = 2/33 (6%)
 Frame = +2

Query: 509 GKNLVGVAQTGSGKTLAYILPAIVHI--NNQPP 601
           G++L+  AQTGSGKT A++LP I ++  +  PP
Sbjct: 195 GRDLMSCAQTGSGKTAAFMLPIIHNLLSDKNPP 227


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 25.4 bits (53), Expect = 0.43
 Identities = 17/49 (34%), Positives = 22/49 (44%)
 Frame = -1

Query: 548 CRNPFGLRQLNSFRHSYRPALSLNGRRFFVTHCLYTLLHIIRKICFFKV 402
           CR  +GL Q N +    RP   L  RR F  H  + L    R+ C+  V
Sbjct: 574 CRARYGLDQQNQWCKPCRPREQLTWRRNF--HGPHRLAARSRRCCYHAV 620


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 25.4 bits (53), Expect = 0.43
 Identities = 17/49 (34%), Positives = 22/49 (44%)
 Frame = -1

Query: 548 CRNPFGLRQLNSFRHSYRPALSLNGRRFFVTHCLYTLLHIIRKICFFKV 402
           CR  +GL Q N +    RP   L  RR F  H  + L    R+ C+  V
Sbjct: 466 CRARYGLDQQNQWCKPCRPREQLTWRRNF--HGPHRLAARSRRCCYHAV 512


>AJ850290-1|CAH64510.1|  533|Tribolium castaneum putative esterase
           protein.
          Length = 533

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 15  VDPASERIHSLNKHLQLNPKN 77
           VDP SER+    + L++NP N
Sbjct: 511 VDPDSERMAFWQRILKINPNN 531


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 233 GRTCDAQMGFCFTPTFQQKLL*STSYSSQKIT 328
           GR C++++ FC T   Q   + +T ++  K T
Sbjct: 332 GRHCESKVNFCATSPCQNGGVCTTIHAGHKCT 363



 Score = 23.0 bits (47), Expect = 2.3
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 596 VGYLCAQLLARCRPTFCRN 540
           +GY+C   +  CRP  C N
Sbjct: 253 LGYICEINVDDCRPGACHN 271


>AJ850291-1|CAH64511.1|  533|Tribolium castaneum putative esterase
           protein.
          Length = 533

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 15  VDPASERIHSLNKHLQLNPKN 77
           VDP S+R+    + L++NP N
Sbjct: 511 VDPDSDRMAFWQRILKINPNN 531


>AJ850289-1|CAH64509.1|  533|Tribolium castaneum putative esterase
           protein.
          Length = 533

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 15  VDPASERIHSLNKHLQLNPKN 77
           VDP S+R+    + L++NP N
Sbjct: 511 VDPDSDRMAFWQRILKINPNN 531


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = -2

Query: 595  LVIYVHNCWQDVGQRFAGTRLGY-AN*ILSDIAIG 494
            L++  H+ W D   +F     GY A  I   +A+G
Sbjct: 1442 LIVKAHDSWADFDNQFYKRVTGYKAKGIKVSLALG 1476


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 164 GLATVAIDLEDLEALVGKKNSLEGRTCDA 250
           G+   +I+ +DL A  G KN+L     DA
Sbjct: 345 GVMIWSIETDDLHATCGTKNALLHAVNDA 373


>AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cognate
           70 protein.
          Length = 196

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/53 (18%), Positives = 23/53 (43%)
 Frame = -3

Query: 210 TKASRSSKSIATVAKPRRIIAEFVASSKFGTTVSTAIIPVTRHDYFSDLVEDV 52
           T+  R+ +++++  +    I        + TT++ A       DYF   ++ V
Sbjct: 93  TQCERAKRTLSSATQASIEIDSLFDGIDYSTTITRARFEDINMDYFKKCIDPV 145


>AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock protein
           70 protein.
          Length = 196

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/53 (18%), Positives = 23/53 (43%)
 Frame = -3

Query: 210 TKASRSSKSIATVAKPRRIIAEFVASSKFGTTVSTAIIPVTRHDYFSDLVEDV 52
           T+  R+ +++++  +    I        + TT++ A       DYF   ++ V
Sbjct: 93  TQCERAKRTLSSATQASIEIDSLFDGIDYSTTITRARFEDINMDYFKKCIDPV 145


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 105 AIIPVTRHDYFSDLVEDVYL 46
           A++PV +H     LV  VYL
Sbjct: 18  ALLPVKKHHRLEKLVPCVYL 37


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -3

Query: 108 TAIIPVTRHDYFSDLVEDVYLNYGFFLT 25
           T  IP    DY  DLV  + +N+   +T
Sbjct: 215 TTEIPPEPEDYVEDLVGHIEVNHSAPIT 242


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,410
Number of Sequences: 336
Number of extensions: 3481
Number of successful extensions: 16
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17489640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)