Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060240.seq
(671 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 111 9e-26
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 54 2e-08
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 50 4e-07
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 47 2e-06
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 40 3e-04
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 39 6e-04
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 38 0.002
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 37 0.002
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 37 0.003
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 36 0.004
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 36 0.004
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 36 0.004
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 35 0.009
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 35 0.009
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 35 0.009
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 35 0.012
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 34 0.016
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 33 0.028
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 33 0.037
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 33 0.037
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 33 0.037
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 31 0.15
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 29 0.46
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa... 29 0.61
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 28 1.4
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 27 1.9
SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 3.3
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 26 4.3
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 26 4.3
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 25 7.5
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 7.5
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 25 9.9
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 111 bits (267), Expect = 9e-26
Identities = 61/139 (43%), Positives = 76/139 (54%)
Frame = +3
Query: 255 WDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYV 434
W + +L PF K+FY H V RS EV EYR + E+ V G+ V P+ FEEA FP+YV
Sbjct: 74 WKNETLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYV 133
Query: 435 QQGVKTMGYKEPTPIQAQGWPIAMSERI*LA*PKRVPAKRWPTSCQQLCT*ITNRLFGEV 614
+ VK +G++ PTPIQ Q WP+AMS R + K + L
Sbjct: 134 LKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPG 193
Query: 615 MVPIALVLAPTRELAQQIQ 671
PI LVLAPTRELA QIQ
Sbjct: 194 DGPIVLVLAPTRELAVQIQ 212
Score = 59.7 bits (138), Expect = 4e-10
Identities = 25/38 (65%), Positives = 32/38 (84%)
Frame = +2
Query: 509 GKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGP 622
G+++VG++ TGSGKTL+Y LPAIVHIN QP + GDGP
Sbjct: 159 GRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGP 196
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 54.0 bits (124), Expect = 2e-08
Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 1/136 (0%)
Frame = +3
Query: 264 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQ 440
++ + F K+FY + SP EV+E R + + + G++ P+ + +
Sbjct: 372 INYEDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTIS 431
Query: 441 GVKTMGYKEPTPIQAQGWPIAMSERI*LA*PKRVPAKRWPTSCQQLCT*ITNRLFGEVMV 620
+ ++GY++PT IQAQ P S R + K K R
Sbjct: 432 VINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEG 491
Query: 621 PIALVLAPTRELAQQI 668
PIA+++ PTRELA QI
Sbjct: 492 PIAIIMTPTRELAVQI 507
Score = 54.0 bits (124), Expect = 2e-08
Identities = 20/38 (52%), Positives = 32/38 (84%)
Frame = +2
Query: 509 GKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGP 622
G++++GVA+TGSGKT+A++LP HI +Q P++ G+GP
Sbjct: 455 GRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGP 492
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 49.6 bits (113), Expect = 4e-07
Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 3/111 (2%)
Frame = +3
Query: 348 RNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSERI*LA 527
+ + +++ G ++ NP++ +EEA P + + +K + YKEP+ IQ P+ + + +
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIG 291
Query: 528 *PKRVPAKRWPTSCQQLCT*ITNRLFGEV---MVPIALVLAPTRELAQQIQ 671
+ K + E + P A+VLAPTRELAQQIQ
Sbjct: 292 IAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQ 342
Score = 44.8 bits (101), Expect = 1e-05
Identities = 17/31 (54%), Positives = 26/31 (83%)
Frame = +2
Query: 512 KNLVGVAQTGSGKTLAYILPAIVHINNQPPI 604
K+L+G+A+TGSGKT A+I+P I+ I+ PP+
Sbjct: 287 KDLIGIAETGSGKTAAFIIPLIIAISKLPPL 317
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 47.2 bits (107), Expect = 2e-06
Identities = 36/112 (32%), Positives = 53/112 (47%), Gaps = 3/112 (2%)
Frame = +3
Query: 339 EEYRNKHEVTVSGVEVHN---PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 509
+ Y KH ++ + + PI F+E + +++G+K YKEPTPIQA WP ++
Sbjct: 144 DRYIKKHNISFADPKSSENLLPILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLA 201
Query: 510 ERI*LA*PKRVPAKRWPTSCQQLCT*ITNRLFGEVMVPIALVLAPTRELAQQ 665
R + + K L N L VP LV++PTRELA Q
Sbjct: 202 GRDVVGIAETGSGKTVAFGIPALQ--YLNGLSDNKSVPRVLVVSPTRELAIQ 251
Score = 39.1 bits (87), Expect = 6e-04
Identities = 14/27 (51%), Positives = 25/27 (92%)
Frame = +2
Query: 509 GKNLVGVAQTGSGKTLAYILPAIVHIN 589
G+++VG+A+TGSGKT+A+ +PA+ ++N
Sbjct: 202 GRDVVGIAETGSGKTVAFGIPALQYLN 228
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 39.9 bits (89), Expect = 3e-04
Identities = 28/88 (31%), Positives = 45/88 (51%)
Frame = +3
Query: 405 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSERI*LA*PKRVPAKRWPTSCQQLCT 584
F+E D + + + +G+K PTPIQ + P+ +++R + + K T+ L
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGK---TAAFALP- 103
Query: 585 *ITNRLFGEVMVPIALVLAPTRELAQQI 668
+ L+ A+VLAPTRELA QI
Sbjct: 104 -VIQELWNNPSPFFAVVLAPTRELAYQI 130
Score = 37.5 bits (83), Expect = 0.002
Identities = 15/29 (51%), Positives = 22/29 (75%)
Frame = +2
Query: 512 KNLVGVAQTGSGKTLAYILPAIVHINNQP 598
++++G+AQTGSGKT A+ LP I + N P
Sbjct: 84 RDVIGLAQTGSGKTAAFALPVIQELWNNP 112
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 39.1 bits (87), Expect = 6e-04
Identities = 14/28 (50%), Positives = 24/28 (85%)
Frame = +2
Query: 509 GKNLVGVAQTGSGKTLAYILPAIVHINN 592
G+++VG+A+TGSGKT A+++P I H+ +
Sbjct: 106 GRDVVGMARTGSGKTAAFVIPMIEHLKS 133
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 37.5 bits (83), Expect = 0.002
Identities = 29/92 (31%), Positives = 44/92 (47%)
Frame = +3
Query: 396 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSERI*LA*PKRVPAKRWPTSCQQ 575
I F++ N + +G+ G++ P+ IQ + + ER LA + K S
Sbjct: 18 IDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISV 77
Query: 576 LCT*ITNRLFGEVMVPIALVLAPTRELAQQIQ 671
L ++ + AL+LAPTRELAQQIQ
Sbjct: 78 L-----QKIDTSLKQCQALILAPTRELAQQIQ 104
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 37.1 bits (82), Expect = 0.002
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = +3
Query: 363 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
V VSG ++ P+ F ++ Q +K GY +PTP+Q PI S R
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGR 207
Score = 30.3 bits (65), Expect = 0.26
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +2
Query: 509 GKNLVGVAQTGSGKTLAYILPAI 577
G++L+ AQTGSGKT ++ P +
Sbjct: 206 GRDLMACAQTGSGKTAGFLFPIL 228
Score = 25.4 bits (53), Expect = 7.5
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +3
Query: 621 PIALVLAPTRELAQQI 668
P L+LAPTREL QI
Sbjct: 256 PTTLILAPTRELVCQI 271
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 36.7 bits (81), Expect = 0.003
Identities = 14/26 (53%), Positives = 23/26 (88%)
Frame = +2
Query: 509 GKNLVGVAQTGSGKTLAYILPAIVHI 586
G++++G A+TGSGKTLA+I+P I ++
Sbjct: 76 GRDILGAAKTGSGKTLAFIVPLIENL 101
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 36.3 bits (80), Expect = 0.004
Identities = 15/31 (48%), Positives = 23/31 (74%)
Frame = +2
Query: 506 VGKNLVGVAQTGSGKTLAYILPAIVHINNQP 598
+GK++VG A TGSGKT A+I+P + + +P
Sbjct: 295 LGKDIVGAAVTGSGKTAAFIVPILERLLYRP 325
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 36.3 bits (80), Expect = 0.004
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +2
Query: 446 KDNGLQRTDAHSSSRLADSYVGKNLVGVAQTGSGKTLAYILPAI 577
K+ G + + G++++G A+TGSGKTLA+++P I
Sbjct: 105 KEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTI 148
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 36.3 bits (80), Expect = 0.004
Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
Frame = +3
Query: 396 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSERI*LA*PKRVPAKRWPTSCQQ 575
++ FEE + +G+ +M +++P+ IQ + P+ +S P+ + + + +
Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNP-----PRNMIGQSQSGTGKT 167
Query: 576 LCT*IT--NRLFGEVMVPIALVLAPTRELAQQI 668
+T +R+ V P A+ LAP+RELA+QI
Sbjct: 168 AAFALTMLSRVDASVPKPQAICLAPSRELARQI 200
Score = 28.7 bits (61), Expect = 0.81
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +2
Query: 512 KNLVGVAQTGSGKTLAYILPAIVHINNQPP 601
+N++G +Q+G+GKT A+ L + ++ P
Sbjct: 154 RNMIGQSQSGTGKTAAFALTMLSRVDASVP 183
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 35.1 bits (77), Expect = 0.009
Identities = 16/32 (50%), Positives = 22/32 (68%)
Frame = +2
Query: 509 GKNLVGVAQTGSGKTLAYILPAIVHINNQPPI 604
GK+LV A+TGSGKT AY++P + + Q I
Sbjct: 51 GKDLVAQARTGSGKTAAYLIPILELLLKQKQI 82
Score = 34.3 bits (75), Expect = 0.016
Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Frame = +3
Query: 375 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSERI*LA*PKRVPAKR 554
G+ + + F + N +Q+ + +++PT +Q++ P+A+ + +A + K
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKT 65
Query: 555 WPTSCQQLCT*ITNRLFGEVMVPI-ALVLAPTRELAQQI 668
L + + E I AL+L PTRELAQQ+
Sbjct: 66 AAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQV 104
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 35.1 bits (77), Expect = 0.009
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +2
Query: 491 LADSYVGKNLVGVAQTGSGKTLAYILPAIVHINNQP 598
+A G+N +G A+TGSGKT A+ LP I + P
Sbjct: 38 IAQILEGRNCIGGAKTGSGKTAAFALPIIEKWSKDP 73
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 35.1 bits (77), Expect = 0.009
Identities = 33/111 (29%), Positives = 50/111 (45%)
Frame = +3
Query: 339 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSERI 518
+E E+T S E N + FEE N + + +G+ GY+ P+ +Q++ R
Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRD 60
Query: 519 *LA*PKRVPAKRWPTSCQQLCT*ITNRLFGEVMVPIALVLAPTRELAQQIQ 671
+A + K S I + V AL+L+PTRELA QIQ
Sbjct: 61 VIAQAQSGTGKTATFSIG-----ILQSIDLSVRDTQALILSPTRELAVQIQ 106
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 34.7 bits (76), Expect = 0.012
Identities = 13/31 (41%), Positives = 23/31 (74%)
Frame = +2
Query: 491 LADSYVGKNLVGVAQTGSGKTLAYILPAIVH 583
+ ++ +G +++G A TGSGKTLA+ +P + H
Sbjct: 153 IPEASIGFDIIGKADTGSGKTLAFGIPILEH 183
Score = 26.6 bits (56), Expect = 3.3
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +3
Query: 627 ALVLAPTRELAQQI 668
ALV+APTRELA QI
Sbjct: 195 ALVVAPTRELAHQI 208
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 34.3 bits (75), Expect = 0.016
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Frame = +3
Query: 405 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSERI*LA*PKRVPAKRWPTSCQQLC- 581
F+ N +++ V G+K+ TP+QA P+ + + + + V + C
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVV--EAVTGSGKTLAYLLPCF 60
Query: 582 T*ITNRLFGEVMVPIALVLAPTRELAQQI 668
+T R E + AL++APTRELA QI
Sbjct: 61 DKVTRRDTDETGLG-ALIVAPTRELATQI 88
Score = 33.1 bits (72), Expect = 0.037
Identities = 17/36 (47%), Positives = 21/36 (58%)
Frame = +2
Query: 512 KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDG 619
K+LV A TGSGKTLAY+LP + + G G
Sbjct: 39 KDLVVEAVTGSGKTLAYLLPCFDKVTRRDTDETGLG 74
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 33.5 bits (73), Expect = 0.028
Identities = 28/87 (32%), Positives = 40/87 (45%)
Frame = +3
Query: 405 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSERI*LA*PKRVPAKRWPTSCQQLCT 584
FE+ + G+ G++ P+PIQ + PIA+S R LA K K L
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEK 105
Query: 585 *ITNRLFGEVMVPIALVLAPTRELAQQ 665
T + ++ L+L PTRELA Q
Sbjct: 106 VDTKK--SKIQ---TLILVPTRELALQ 127
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 33.1 bits (72), Expect = 0.037
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +2
Query: 530 AQTGSGKTLAYILPAIVHINNQP 598
AQTGSGKTLAY+LP + + P
Sbjct: 185 AQTGSGKTLAYLLPIVQRLIRLP 207
Score = 25.8 bits (54), Expect = 5.7
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = +3
Query: 627 ALVLAPTRELAQQI 668
A+++APTREL QQI
Sbjct: 219 AVIMAPTRELCQQI 232
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 33.1 bits (72), Expect = 0.037
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +2
Query: 515 NLVGVAQTGSGKTLAYILPAIVHINNQPP 601
NL+ V TG GK+L++++PA++ Q P
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQTP 1236
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 33.1 bits (72), Expect = 0.037
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +2
Query: 515 NLVGVAQTGSGKTLAYILPAIVHINNQPP 601
NL+ V TG GK+L++++PA++ Q P
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQTP 1236
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 31.1 bits (67), Expect = 0.15
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +2
Query: 467 TDAHSSSRLADSYVG--KNLVGVAQTGSGKTLAYILPAIVHINNQPP 601
T+ + R A +G ++L+ A TGSGKT+AY+ P + + P
Sbjct: 67 TECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVP 113
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 29.5 bits (63), Expect = 0.46
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +2
Query: 500 SYVGKNLVGVAQTGSGKTLAYILPAI 577
SY G V A TGSGKTL+Y++P +
Sbjct: 171 SYGGDVCVSAA-TGSGKTLSYVIPIV 195
>SPBC31F10.04c |srb4|med17|mediator complex subunit
Srb4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 29.1 bits (62), Expect = 0.61
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Frame = -3
Query: 261 NPIWASHVLPSREFFFPTKASRSSKSIATVAKPRRIIAEFVASSKFGTTVSTAIIPV--T 88
+P S V PS F ++ S +S AT+AK + +S KF + V T
Sbjct: 142 SPFLKSTVPPSSLQFSRSQPPESKESDATLAKCWKE-KSLTSSCKFLFEAKERLTSVVET 200
Query: 87 RHDYFSDLVEDVYLNYGFFLTQG 19
H+Y+++LV+ ++ F +QG
Sbjct: 201 EHEYYTELVKVKEASWPLFNSQG 223
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 27.9 bits (59), Expect = 1.4
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 509 GKNLVGVAQTGSGKTLAYILPAIV 580
GK++ + TG GK+L Y LPA++
Sbjct: 534 GKDVFILMPTGGGKSLCYQLPAVI 557
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 512 KNLVGVAQTGSGKTLAYILPAIVHINNQPP 601
+N V A+TG+GKTLA++L A + P
Sbjct: 77 ENAVVQAKTGTGKTLAFLLVAFKDVLKGKP 106
>SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 105
Score = 26.6 bits (56), Expect = 3.3
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -1
Query: 467 FFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYLVFISIL 342
FF Y ++ I+ CFF +NR T+S +VF ++
Sbjct: 16 FFWKQSKYQSIYAIQIRCFFLTVNRTPIPKQTFSLIVFYILI 57
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 26.2 bits (55), Expect = 4.3
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +3
Query: 327 PYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 458
P+E + + KH++ ++ V +Q +E+ F + ++ VK G
Sbjct: 256 PFEPPKPKTKHKLDITSVSEFEALQAYEKEKFQEMIKH-VKDAG 298
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 26.2 bits (55), Expect = 4.3
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 327 PYEVEEYRNKHEVTVS 374
PYE++ YRNKH +S
Sbjct: 253 PYEIQVYRNKHWFPIS 268
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 25.4 bits (53), Expect = 7.5
Identities = 10/28 (35%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = -3
Query: 102 IIPVTR-HDYFSDLVEDVYLNYGFFLTQ 22
++PVT+ + D++ED++ NY F +T+
Sbjct: 221 VVPVTQVKNAPDDVLEDLFKNYDFIVTE 248
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 7.5
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -3
Query: 456 PLSLHLVAHNQENL--LLQSIE 397
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/46 (23%), Positives = 23/46 (50%)
Frame = +2
Query: 449 DNGLQRTDAHSSSRLADSYVGKNLVGVAQTGSGKTLAYILPAIVHI 586
D+G + + S +G +++ A++G GKT ++L + I
Sbjct: 68 DSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQI 113
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,684,360
Number of Sequences: 5004
Number of extensions: 58020
Number of successful extensions: 223
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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