Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060240.seq
(671 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 109 1e-24
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 103 1e-22
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 103 1e-22
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 80 2e-15
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 78 6e-15
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 78 6e-15
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 78 6e-15
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 72 3e-13
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 71 7e-13
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 71 9e-13
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 58 7e-09
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 50 1e-06
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 50 1e-06
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 46 2e-05
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 45 4e-05
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 44 7e-05
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 44 7e-05
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 44 9e-05
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 44 1e-04
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 44 1e-04
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 44 1e-04
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 42 5e-04
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 40 0.001
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 40 0.002
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 40 0.002
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 39 0.003
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 39 0.003
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 38 0.005
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 38 0.005
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 38 0.006
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 38 0.006
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 38 0.006
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 38 0.006
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 37 0.014
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 37 0.014
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 36 0.025
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 36 0.025
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 36 0.025
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 36 0.032
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 36 0.032
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 35 0.043
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 35 0.043
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 34 0.099
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 33 0.13
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 33 0.13
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 33 0.17
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 33 0.23
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 33 0.23
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 33 0.23
At3g14810.1 68416.m01871 mechanosensitive ion channel domain-con... 32 0.40
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 32 0.40
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 32 0.40
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 32 0.40
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 31 0.53
At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative severa... 31 0.53
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 31 0.92
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 31 0.92
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 31 0.92
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 30 1.2
At2g25460.1 68415.m03049 expressed protein 30 1.2
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 30 1.2
At5g25520.2 68418.m03037 transcription elongation factor-related... 29 2.8
At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical... 29 3.7
At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical... 29 3.7
At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical... 29 3.7
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 28 4.9
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 28 4.9
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 28 4.9
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 28 6.5
At1g53470.1 68414.m06061 mechanosensitive ion channel domain-con... 28 6.5
At5g64440.1 68418.m08095 amidase family protein low similarity t... 27 8.6
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 27 8.6
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 109 bits (263), Expect = 1e-24
Identities = 59/138 (42%), Positives = 74/138 (53%)
Frame = +3
Query: 258 DSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQ 437
D L PF KNFY P V + EVEEYR E+TV G ++ P++ F + FPDYV
Sbjct: 52 DLDGLTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGFPDYVL 111
Query: 438 QGVKTMGYKEPTPIQAQGWPIAMSERI*LA*PKRVPAKRWPTSCQQLCT*ITNRLFGEVM 617
+ VK G+ EPTPIQ+QGWP+AM R + + K + +
Sbjct: 112 EEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGD 171
Query: 618 VPIALVLAPTRELAQQIQ 671
PI LVLAPTRELA QIQ
Sbjct: 172 GPIVLVLAPTRELAVQIQ 189
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 103 bits (246), Expect = 1e-22
Identities = 54/141 (38%), Positives = 79/141 (56%)
Frame = +3
Query: 249 PRWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPD 428
P+ + +L F KNFY PTV + +V YR + +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 429 YVQQGVKTMGYKEPTPIQAQGWPIAMSERI*LA*PKRVPAKRWPTSCQQLCT*ITNRLFG 608
+ + + +G+ EPTPIQAQGWP+A+ R + + K L G
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLG 234
Query: 609 EVMVPIALVLAPTRELAQQIQ 671
+ PI L+LAPTRELA QIQ
Sbjct: 235 QDDGPIVLILAPTRELAVQIQ 255
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 103 bits (246), Expect = 1e-22
Identities = 54/141 (38%), Positives = 79/141 (56%)
Frame = +3
Query: 249 PRWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPD 428
P+ + +L F KNFY PTV + +V YR + +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 429 YVQQGVKTMGYKEPTPIQAQGWPIAMSERI*LA*PKRVPAKRWPTSCQQLCT*ITNRLFG 608
+ + + +G+ EPTPIQAQGWP+A+ R + + K L G
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLG 234
Query: 609 EVMVPIALVLAPTRELAQQIQ 671
+ PI L+LAPTRELA QIQ
Sbjct: 235 QDDGPIVLILAPTRELAVQIQ 255
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 79.8 bits (188), Expect = 2e-15
Identities = 42/136 (30%), Positives = 66/136 (48%)
Frame = +3
Query: 261 SVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQ 440
S+ +P NK+FY+ ++ + E +YR + + VSG +VH P++ FE+ F +
Sbjct: 182 SIDYEPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMS 241
Query: 441 GVKTMGYKEPTPIQAQGWPIAMSERI*LA*PKRVPAKRWPTSCQQLCT*ITNRLFGEVMV 620
+K Y++PT IQ Q PI +S R + K K + +
Sbjct: 242 AIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQRDEG 301
Query: 621 PIALVLAPTRELAQQI 668
PI ++ APTRELA QI
Sbjct: 302 PIGVICAPTRELAHQI 317
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 77.8 bits (183), Expect = 6e-15
Identities = 50/125 (40%), Positives = 63/125 (50%), Gaps = 1/125 (0%)
Frame = +3
Query: 300 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 479
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 480 QAQGWPIAMSERI*LA*PKRVPAKRWPTSCQQLCT*ITNRLFGEV-MVPIALVLAPTREL 656
QAQ WPIAM R +A K K R+ + M P LVL+PTREL
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLH--LQRIRNDSRMGPTILVLSPTREL 242
Query: 657 AQQIQ 671
A QIQ
Sbjct: 243 ATQIQ 247
Score = 39.1 bits (87), Expect = 0.003
Identities = 13/26 (50%), Positives = 22/26 (84%)
Frame = +2
Query: 509 GKNLVGVAQTGSGKTLAYILPAIVHI 586
G+++V +A+TGSGKTL Y++P +H+
Sbjct: 195 GRDIVAIAKTGSGKTLGYLIPGFLHL 220
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 77.8 bits (183), Expect = 6e-15
Identities = 50/125 (40%), Positives = 63/125 (50%), Gaps = 1/125 (0%)
Frame = +3
Query: 300 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 479
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 480 QAQGWPIAMSERI*LA*PKRVPAKRWPTSCQQLCT*ITNRLFGEV-MVPIALVLAPTREL 656
QAQ WPIAM R +A K K R+ + M P LVL+PTREL
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLH--LQRIRNDSRMGPTILVLSPTREL 242
Query: 657 AQQIQ 671
A QIQ
Sbjct: 243 ATQIQ 247
Score = 39.1 bits (87), Expect = 0.003
Identities = 13/26 (50%), Positives = 22/26 (84%)
Frame = +2
Query: 509 GKNLVGVAQTGSGKTLAYILPAIVHI 586
G+++V +A+TGSGKTL Y++P +H+
Sbjct: 195 GRDIVAIAKTGSGKTLGYLIPGFLHL 220
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 77.8 bits (183), Expect = 6e-15
Identities = 50/125 (40%), Positives = 63/125 (50%), Gaps = 1/125 (0%)
Frame = +3
Query: 300 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 479
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 480 QAQGWPIAMSERI*LA*PKRVPAKRWPTSCQQLCT*ITNRLFGEV-MVPIALVLAPTREL 656
QAQ WPIAM R +A K K R+ + M P LVL+PTREL
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLH--LQRIRNDSRMGPTILVLSPTREL 242
Query: 657 AQQIQ 671
A QIQ
Sbjct: 243 ATQIQ 247
Score = 39.1 bits (87), Expect = 0.003
Identities = 13/26 (50%), Positives = 22/26 (84%)
Frame = +2
Query: 509 GKNLVGVAQTGSGKTLAYILPAIVHI 586
G+++V +A+TGSGKTL Y++P +H+
Sbjct: 195 GRDIVAIAKTGSGKTLGYLIPGFLHL 220
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 72.1 bits (169), Expect = 3e-13
Identities = 49/134 (36%), Positives = 65/134 (48%), Gaps = 4/134 (2%)
Frame = +3
Query: 282 NKNFYDPH----PTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVK 449
NK+ PH P V SP E+ YR +HEVT +G + P FE + P + + +
Sbjct: 394 NKSLVRPHFVTSPDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLPPEILRELL 451
Query: 450 TMGYKEPTPIQAQGWPIAMSERI*LA*PKRVPAKRWPTSCQQLCT*ITNRLFGEVMVPIA 629
+ G+ PTPIQAQ WPIA+ R +A K K + + P
Sbjct: 452 SAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFIL-LRHCRNDSRNGPTV 510
Query: 630 LVLAPTRELAQQIQ 671
L+LAPTRELA QIQ
Sbjct: 511 LILAPTRELATQIQ 524
Score = 35.1 bits (77), Expect = 0.043
Identities = 12/23 (52%), Positives = 20/23 (86%)
Frame = +2
Query: 512 KNLVGVAQTGSGKTLAYILPAIV 580
+++V +A+TGSGKTL Y++PA +
Sbjct: 473 RDIVAIAKTGSGKTLGYLIPAFI 495
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 70.9 bits (166), Expect = 7e-13
Identities = 45/135 (33%), Positives = 63/135 (46%)
Frame = +3
Query: 264 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQG 443
+ +PF KNFY + + + V YR + E+ V G +V PIQ++ + +
Sbjct: 351 IEYEPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDT 410
Query: 444 VKTMGYKEPTPIQAQGWPIAMSERI*LA*PKRVPAKRWPTSCQQLCT*ITNRLFGEVMVP 623
+K + Y++P PIQAQ PI MS R + K K L P
Sbjct: 411 LKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGP 470
Query: 624 IALVLAPTRELAQQI 668
I LV+APTREL QQI
Sbjct: 471 IGLVMAPTRELVQQI 485
Score = 58.4 bits (135), Expect = 4e-09
Identities = 22/38 (57%), Positives = 31/38 (81%)
Frame = +2
Query: 509 GKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGP 622
G++ +GVA+TGSGKTL ++LP + HI +QPP+ GDGP
Sbjct: 433 GRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGP 470
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 70.5 bits (165), Expect = 9e-13
Identities = 44/135 (32%), Positives = 63/135 (46%)
Frame = +3
Query: 264 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQG 443
+ +PF KNFY + + + EV YR + E+ V G +V PI+++ + +
Sbjct: 484 IEYEPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDT 543
Query: 444 VKTMGYKEPTPIQAQGWPIAMSERI*LA*PKRVPAKRWPTSCQQLCT*ITNRLFGEVMVP 623
+K + Y++P PIQ Q PI MS R + K K L P
Sbjct: 544 MKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGP 603
Query: 624 IALVLAPTRELAQQI 668
I LV+APTREL QQI
Sbjct: 604 IGLVMAPTRELVQQI 618
Score = 58.4 bits (135), Expect = 4e-09
Identities = 22/38 (57%), Positives = 31/38 (81%)
Frame = +2
Query: 509 GKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGP 622
G++ +GVA+TGSGKTL ++LP + HI +QPP+ GDGP
Sbjct: 566 GRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGP 603
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 57.6 bits (133), Expect = 7e-09
Identities = 37/128 (28%), Positives = 62/128 (48%), Gaps = 3/128 (2%)
Frame = +3
Query: 291 FYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 470
++ P V K S +++ R + +TV+G ++ PI+ F + FP + + +K G P
Sbjct: 61 WWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHP 120
Query: 471 TPIQAQGWPIAMSERI*LA*PKRVPAKRWPTSCQQLCT*ITNRLFGEVMV---PIALVLA 641
TPIQ QG P+ +S R + K + + + + PIALV+
Sbjct: 121 TPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVIC 180
Query: 642 PTRELAQQ 665
P+RELA+Q
Sbjct: 181 PSRELAKQ 188
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Frame = +2
Query: 446 KDNGLQRTDAHSSSRLADSYVGKNLVGVAQTGSGKTLAYILPAIVHINNQP---PIRRGD 616
KD G+ L G++++G+A TGSGKTL ++LP I+ + PI G+
Sbjct: 113 KDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGE 172
Query: 617 GP 622
GP
Sbjct: 173 GP 174
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 50.4 bits (115), Expect = 1e-06
Identities = 33/127 (25%), Positives = 59/127 (46%), Gaps = 3/127 (2%)
Frame = +3
Query: 294 YDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 473
+ P + K S + + R + + V+G ++ PI+ F++ FP V +K G +PT
Sbjct: 111 WKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPT 170
Query: 474 PIQAQGWPIAMSERI*LA*PKRVPAKRWPTSCQQLCT*ITNRLFGEVMV---PIALVLAP 644
PIQ QG P+ ++ R + K + + + + PI L++ P
Sbjct: 171 PIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCP 230
Query: 645 TRELAQQ 665
+RELA+Q
Sbjct: 231 SRELARQ 237
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Frame = +2
Query: 446 KDNGLQRTDAHSSSRLADSYVGKNLVGVAQTGSGKTLAYILPAIVHINNQP---PIRRGD 616
K+ G+ + L G++++G+A TGSGKTL ++LP I+ + PI G+
Sbjct: 162 KEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGE 221
Query: 617 GP 622
GP
Sbjct: 222 GP 223
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 50.4 bits (115), Expect = 1e-06
Identities = 38/150 (25%), Positives = 70/150 (46%), Gaps = 5/150 (3%)
Frame = +3
Query: 237 EHATPRWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEA 416
E A +DS ++ ++++ D + + + +R ++ G + P++ +EE+
Sbjct: 262 EEAADTYDSFDMR-VDRHWSDKRLEEMTERDWRI--FREDFNISYKGSRIPRPMRSWEES 318
Query: 417 NFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSERI*LA*PKRVPAKRWPTSCQQLCT*ITN 596
+ + V+ GYK+P+PIQ P+ + +R + + K L +
Sbjct: 319 KLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLA--YIS 376
Query: 597 RL-----FGEVMVPIALVLAPTRELAQQIQ 671
RL E P A+V+APTRELAQQI+
Sbjct: 377 RLPPMSEENETEGPYAVVMAPTRELAQQIE 406
Score = 41.9 bits (94), Expect = 4e-04
Identities = 14/31 (45%), Positives = 26/31 (83%)
Frame = +2
Query: 512 KNLVGVAQTGSGKTLAYILPAIVHINNQPPI 604
++++G+A+TGSGKT A++LP + +I+ PP+
Sbjct: 351 RDVIGIAETGSGKTAAFVLPMLAYISRLPPM 381
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 46.4 bits (105), Expect = 2e-05
Identities = 32/77 (41%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Frame = +3
Query: 444 VKTMGYKEPTPIQAQGWPIAMSERI*LA*PKRVPAKRWPTSCQQLCT*ITNRLFGEV-MV 620
V + G+ P+PIQAQ WPIAM R +A K K R+ + M
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMH--LQRIHNDSRMG 301
Query: 621 PIALVLAPTRELAQQIQ 671
P LVL+PTRELA QIQ
Sbjct: 302 PTILVLSPTRELATQIQ 318
Score = 36.7 bits (81), Expect = 0.014
Identities = 12/25 (48%), Positives = 21/25 (84%)
Frame = +2
Query: 512 KNLVGVAQTGSGKTLAYILPAIVHI 586
+++V +A+TGSGKTL Y++P +H+
Sbjct: 267 RDIVAIAKTGSGKTLGYLIPGFMHL 291
Score = 33.1 bits (72), Expect = 0.17
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 339 EEYRNKHEVTVSGVEVHNPIQYFEEANFPD 428
E Y KHE+TVSG +V P+ FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 45.2 bits (102), Expect = 4e-05
Identities = 38/118 (32%), Positives = 57/118 (48%), Gaps = 6/118 (5%)
Frame = +3
Query: 333 EVEEYRNKHEVTVSGVEV--HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 506
E E + K VT GVE + ++ F E+N P+ V KT +++P+PIQ+ WP +
Sbjct: 92 EGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLL 149
Query: 507 SERI*LA*PKRVPAKRWPTSCQQLCT*IT-NRLFG---EVMVPIALVLAPTRELAQQI 668
R + K K + + N+ G + + P LVL+PTRELA QI
Sbjct: 150 DGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQI 207
Score = 43.2 bits (97), Expect = 2e-04
Identities = 16/26 (61%), Positives = 25/26 (96%)
Frame = +2
Query: 509 GKNLVGVAQTGSGKTLAYILPAIVHI 586
G++L+G+A+TGSGKTLA+ +PAI+H+
Sbjct: 151 GRDLIGIAKTGSGKTLAFGIPAIMHV 176
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 44.4 bits (100), Expect = 7e-05
Identities = 39/103 (37%), Positives = 50/103 (48%), Gaps = 2/103 (1%)
Frame = +3
Query: 366 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSERI*LA*PKRVP 545
TV GV H F E N + + +T+GYK+PTPIQA P+A++ R A
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGS 215
Query: 546 AKRWPTSCQQLCT*ITNRLF--GEVMVPIALVLAPTRELAQQI 668
K T+ L T + LF V L+L PTRELA QI
Sbjct: 216 GK---TAAFALPT-LERLLFRPKRVFATRVLILTPTRELAVQI 254
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 44.4 bits (100), Expect = 7e-05
Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 5/121 (4%)
Frame = +3
Query: 324 SPYEVEEYRNKHEVTVSGV--EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP 497
S ++ + R K ++ V G V P+ F P + ++T GY PTPIQ Q P
Sbjct: 83 SSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIP 142
Query: 498 IAMSERI*LA*PKRVPAK--RWPTSCQQLCT*I-TNRLFGEVMVPIALVLAPTRELAQQI 668
A++ + LA K + CT + + P+A+VLAPTREL Q+
Sbjct: 143 AALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQV 202
Query: 669 Q 671
+
Sbjct: 203 E 203
Score = 30.7 bits (66), Expect = 0.92
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = +2
Query: 509 GKNLVGVAQTGSGKTLAYILPAI 577
GK+L+ A TGSGKT ++++P I
Sbjct: 147 GKSLLASADTGSGKTASFLVPII 169
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 44.0 bits (99), Expect = 9e-05
Identities = 34/110 (30%), Positives = 51/110 (46%), Gaps = 4/110 (3%)
Frame = +3
Query: 348 RNKHEVTVSGVEVHNPIQYFEEANF----PDYVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
R ++ + VSG + P++ F E + Y+ + + +G+KEPTPIQ Q PI +S R
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGR 179
Query: 516 I*LA*PKRVPAKRWPTSCQQLCT*ITNRLFGEVMVPIALVLAPTRELAQQ 665
A K + C L G A++L+P RELA Q
Sbjct: 180 ECFACAPTGSGKTFAFICPMLIKLKRPSTDG----IRAVILSPARELAAQ 225
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 43.6 bits (98), Expect = 1e-04
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 6/108 (5%)
Frame = +3
Query: 363 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSERI*LA*PKRV 542
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ER +A +
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTG 198
Query: 543 PAKRWPTSCQQLCT*I-----TNRLFG-EVMVPIALVLAPTRELAQQI 668
K C + + I R G + P A++L+PTRELA QI
Sbjct: 199 SGKT-AAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQI 245
Score = 31.1 bits (67), Expect = 0.70
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 512 KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDG 619
++L+ AQTGSGKT A+ P I I + R G
Sbjct: 189 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRG 224
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 43.6 bits (98), Expect = 1e-04
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 6/108 (5%)
Frame = +3
Query: 363 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSERI*LA*PKRV 542
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ER +A +
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTG 198
Query: 543 PAKRWPTSCQQLCT*I-----TNRLFG-EVMVPIALVLAPTRELAQQI 668
K C + + I R G + P A++L+PTRELA QI
Sbjct: 199 SGKT-AAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQI 245
Score = 31.1 bits (67), Expect = 0.70
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 512 KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDG 619
++L+ AQTGSGKT A+ P I I + R G
Sbjct: 189 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRG 224
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 43.6 bits (98), Expect = 1e-04
Identities = 37/147 (25%), Positives = 63/147 (42%), Gaps = 9/147 (6%)
Frame = +3
Query: 255 WD--SVSLQPFNKNFYDPHPTVLKRSPYEVE-EYRNKHEVTVSGVEVHNPIQYFEEANFP 425
WD + PF + +P P ++ + + + SG V P+ F E +
Sbjct: 108 WDRREREVNPFENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTFAEIDLG 167
Query: 426 DYVQQGVKTMGYKEPTPIQAQGWPIAMSERI*LA*PKRVPAKRWPTSCQQLCT*I----- 590
+ + ++ Y +PTP+Q PI + R +A + K C + + I
Sbjct: 168 EALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKT-AAFCFPIISGIMKDQH 226
Query: 591 TNRLFG-EVMVPIALVLAPTRELAQQI 668
R G + P+A++L+PTRELA QI
Sbjct: 227 VQRPRGSRTVYPLAVILSPTRELASQI 253
Score = 33.9 bits (74), Expect = 0.099
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +2
Query: 509 GKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDG 619
G++L+ AQTGSGKT A+ P I I ++R G
Sbjct: 196 GRDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRG 232
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 41.5 bits (93), Expect = 5e-04
Identities = 20/55 (36%), Positives = 31/55 (56%)
Frame = +2
Query: 446 KDNGLQRTDAHSSSRLADSYVGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRR 610
KD G + + L GK+++ A+TG+GKT+A++LPAI + PP R
Sbjct: 398 KDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASR 452
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/52 (32%), Positives = 31/52 (59%)
Frame = +2
Query: 443 CKDNGLQRTDAHSSSRLADSYVGKNLVGVAQTGSGKTLAYILPAIVHINNQP 598
CK+ G+++ + + G++++G+AQTGSGKT A+ LP + + P
Sbjct: 73 CKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHRLAEDP 124
Score = 32.3 bits (70), Expect = 0.30
Identities = 27/88 (30%), Positives = 42/88 (47%)
Frame = +3
Query: 405 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSERI*LA*PKRVPAKRWPTSCQQLCT 584
FE ++ + K +G ++PTP+Q P ++ R L + K T+ L
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGK---TAAFALP- 115
Query: 585 *ITNRLFGEVMVPIALVLAPTRELAQQI 668
I +RL + ALV+ PTRELA Q+
Sbjct: 116 -ILHRLAEDPYGVFALVVTPTRELAFQL 142
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/44 (36%), Positives = 29/44 (65%)
Frame = +2
Query: 446 KDNGLQRTDAHSSSRLADSYVGKNLVGVAQTGSGKTLAYILPAI 577
K+ G R + + +G++++G A+TGSGKTLA+++PA+
Sbjct: 170 KEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAV 213
Score = 28.3 bits (60), Expect = 4.9
Identities = 19/78 (24%), Positives = 32/78 (41%)
Frame = +3
Query: 273 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 452
+P K T K EVE+ + ++ + + + FE + D + +K
Sbjct: 115 EPKKKKKKQRKDTEAKSEEEEVEDKEEEKKLEETSIMTNKT---FESLSLSDNTYKSIKE 171
Query: 453 MGYKEPTPIQAQGWPIAM 506
MG+ T IQA+ P M
Sbjct: 172 MGFARMTQIQAKAIPPLM 189
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/44 (38%), Positives = 28/44 (63%)
Frame = +2
Query: 446 KDNGLQRTDAHSSSRLADSYVGKNLVGVAQTGSGKTLAYILPAI 577
K+ G Q + + GK+++G A+TGSGKTLA+++PA+
Sbjct: 105 KEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAV 148
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 39.1 bits (87), Expect = 0.003
Identities = 40/147 (27%), Positives = 62/147 (42%), Gaps = 9/147 (6%)
Frame = +3
Query: 255 WD--SVSLQPF-NKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFP 425
WD PF N DP + + E Y + + SG V P+ F E +
Sbjct: 96 WDRRDTETNPFGNDGNADPAVNEQENTVINFEAYEDI-PIETSGDNVPPPVNTFAEIDLG 154
Query: 426 DYVQQGVKTMGYKEPTPIQAQGWPIAMSERI*LA*PKRVPAKRWPTSCQQLCT*I----- 590
+ + ++ Y +PTP+Q PI + R +A + K C + + I
Sbjct: 155 EALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKT-AAFCFPIISGIMKDQH 213
Query: 591 TNRLFG-EVMVPIALVLAPTRELAQQI 668
R G + P+A++L+PTRELA QI
Sbjct: 214 IERPRGVRGVYPLAVILSPTRELACQI 240
Score = 33.9 bits (74), Expect = 0.099
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = +2
Query: 509 GKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDG 619
G++L+ AQTGSGKT A+ P I I I R G
Sbjct: 183 GRDLMACAQTGSGKTAAFCFPIISGIMKDQHIERPRG 219
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/53 (37%), Positives = 30/53 (56%)
Frame = +2
Query: 440 RCKDNGLQRTDAHSSSRLADSYVGKNLVGVAQTGSGKTLAYILPAIVHINNQP 598
+ K NG++ +S G +LVG A+TG GKTLA++LP + + N P
Sbjct: 110 KLKANGIEALFPIQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGP 162
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/52 (34%), Positives = 30/52 (57%)
Frame = +2
Query: 446 KDNGLQRTDAHSSSRLADSYVGKNLVGVAQTGSGKTLAYILPAIVHINNQPP 601
KD G + + L GK+++ A+TG+GKT+A++LP+I + PP
Sbjct: 70 KDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPP 121
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 38.3 bits (85), Expect = 0.005
Identities = 15/43 (34%), Positives = 31/43 (72%)
Frame = +2
Query: 467 TDAHSSSRLADSYVGKNLVGVAQTGSGKTLAYILPAIVHINNQ 595
TD S++ + + G++++G A+TGSGKTLA+++P + ++ +
Sbjct: 95 TDVQSAA-IPHALCGRDILGAARTGSGKTLAFVIPILEKLHRE 136
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 37.9 bits (84), Expect = 0.006
Identities = 15/34 (44%), Positives = 25/34 (73%)
Frame = +2
Query: 509 GKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRR 610
GK+++ A+TG+GKT+A++LP+I + PP R
Sbjct: 117 GKDILAKAKTGTGKTVAFLLPSIEAVIKAPPASR 150
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 37.9 bits (84), Expect = 0.006
Identities = 26/87 (29%), Positives = 42/87 (48%)
Frame = +3
Query: 405 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSERI*LA*PKRVPAKRWPTSCQQLCT 584
FE+ + G+ G++ P+PIQ + PIA++ R LA AK C
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILA-----RAKNGTGKTAAFCI 187
Query: 585 *ITNRLFGEVMVPIALVLAPTRELAQQ 665
+ ++ + V A+++ PTRELA Q
Sbjct: 188 PVLEKIDQDNNVIQAVIIVPTRELALQ 214
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 37.9 bits (84), Expect = 0.006
Identities = 26/87 (29%), Positives = 42/87 (48%)
Frame = +3
Query: 405 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSERI*LA*PKRVPAKRWPTSCQQLCT 584
FE+ + G+ G++ P+PIQ + PIA++ R LA AK C
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILA-----RAKNGTGKTAAFCI 187
Query: 585 *ITNRLFGEVMVPIALVLAPTRELAQQ 665
+ ++ + V A+++ PTRELA Q
Sbjct: 188 PVLEKIDQDNNVIQAVIIVPTRELALQ 214
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 37.9 bits (84), Expect = 0.006
Identities = 15/26 (57%), Positives = 22/26 (84%)
Frame = +2
Query: 500 SYVGKNLVGVAQTGSGKTLAYILPAI 577
+Y GK+++G A+TGSGKTLA+ LP +
Sbjct: 225 AYQGKDVIGAAETGSGKTLAFGLPIL 250
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 36.7 bits (81), Expect = 0.014
Identities = 17/41 (41%), Positives = 26/41 (63%)
Frame = +2
Query: 455 GLQRTDAHSSSRLADSYVGKNLVGVAQTGSGKTLAYILPAI 577
G+++ S + GK++V A+TGSGKTLAY+LP +
Sbjct: 65 GIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYLLPLL 105
Score = 35.5 bits (78), Expect = 0.032
Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 1/113 (0%)
Frame = +3
Query: 333 EVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSE 512
EVEE RN E E P + FEE + + + G ++PT IQ P +
Sbjct: 25 EVEEQRNDREQEEEQKEEEAP-KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEG 83
Query: 513 RI*LA*PKRVPAKRWPTSCQQLCT*IT-NRLFGEVMVPIALVLAPTRELAQQI 668
+ +A K K L + + + + + P A +L P+REL QQ+
Sbjct: 84 KDVVARAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQV 136
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 36.7 bits (81), Expect = 0.014
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +2
Query: 446 KDNGLQRTDAHSSSRLADSYVGKNLVGVAQTGSGKTLAYILPAIVH-INNQPPIRRGDGP 622
K G+++ + L + G++++G A+TG+GKTLA+ +P I I RG P
Sbjct: 132 KGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNP 191
Query: 623 DCFGL 637
C L
Sbjct: 192 QCLVL 196
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +3
Query: 594 NRLFGEVMVPIALVLAPTRELAQQIQ 671
N G P LVLAPTRELA+Q++
Sbjct: 182 NAKHGRGKNPQCLVLAPTRELARQVE 207
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 35.9 bits (79), Expect = 0.025
Identities = 26/87 (29%), Positives = 42/87 (48%)
Frame = +3
Query: 405 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSERI*LA*PKRVPAKRWPTSCQQLCT 584
FE+ + +G+ G+++P+PIQ + PIA++ LA AK C
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILA-----RAKNGTGKTGAFCI 180
Query: 585 *ITNRLFGEVMVPIALVLAPTRELAQQ 665
+ ++ V A++L PTRELA Q
Sbjct: 181 PVLEKIDPNNNVIQAMILVPTRELALQ 207
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 35.9 bits (79), Expect = 0.025
Identities = 26/87 (29%), Positives = 42/87 (48%)
Frame = +3
Query: 405 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSERI*LA*PKRVPAKRWPTSCQQLCT 584
FE+ + +G+ G+++P+PIQ + PIA++ LA AK C
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILA-----RAKNGTGKTGAFCI 180
Query: 585 *ITNRLFGEVMVPIALVLAPTRELAQQ 665
+ ++ V A++L PTRELA Q
Sbjct: 181 PVLEKIDPNNNVIQAMILVPTRELALQ 207
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 35.9 bits (79), Expect = 0.025
Identities = 27/87 (31%), Positives = 42/87 (48%)
Frame = +3
Query: 405 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSERI*LA*PKRVPAKRWPTSCQQLCT 584
FE+ + +G+ G+++P+PIQ + PIA++ LA AK C
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILA-----RAKNGTGKTGAFCI 210
Query: 585 *ITNRLFGEVMVPIALVLAPTRELAQQ 665
++ E V A++L PTRELA Q
Sbjct: 211 PTLEKIDPENNVIQAVILVPTRELALQ 237
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 35.5 bits (78), Expect = 0.032
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +2
Query: 443 CKDNGLQRTDAHSSSRLADSYVGKNLVGVAQTGSGKTLAYILPAI 577
C+ G + + L + GK+++G+AQTGSGKT A+ +P +
Sbjct: 24 CERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPIL 68
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 35.5 bits (78), Expect = 0.032
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +2
Query: 446 KDNGLQRTDAHSSSRLADSYVGKNLVGVAQTGSGKTLAYILPAIVHINN 592
+D+G R + + GK+++ A+TGSGKT Y+ P I + N
Sbjct: 96 RDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPIIDQLTN 144
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 35.1 bits (77), Expect = 0.043
Identities = 29/87 (33%), Positives = 40/87 (45%)
Frame = +3
Query: 405 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSERI*LA*PKRVPAKRWPTSCQQLCT 584
FE N V +K GYK PTPIQ + P+ +S +A + K L
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEK 89
Query: 585 *ITNRLFGEVMVPIALVLAPTRELAQQ 665
+ G V AL+L+PTR+LA+Q
Sbjct: 90 LKQHVPQGGVR---ALILSPTRDLAEQ 113
Score = 31.9 bits (69), Expect = 0.40
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +2
Query: 509 GKNLVGVAQTGSGKTLAYILPAIVHINNQPP 601
G ++V +A+TGSGKT A+++P + + P
Sbjct: 65 GVDVVAMARTGSGKTAAFLIPMLEKLKQHVP 95
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 35.1 bits (77), Expect = 0.043
Identities = 30/93 (32%), Positives = 46/93 (49%)
Frame = +3
Query: 393 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSERI*LA*PKRVPAKRWPTSCQ 572
PI+ F++ D V +GV GYK+P+ IQ + + R +A + K +
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAI- 78
Query: 573 QLCT*ITNRLFGEVMVPIALVLAPTRELAQQIQ 671
+C I N +V V LVL+P+RELA Q +
Sbjct: 79 SVCQ-IVNISSRKVQV---LVLSPSRELASQTE 107
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 33.9 bits (74), Expect = 0.099
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = +2
Query: 509 GKNLVGVAQTGSGKTLAYILPAIVHI-NNQPPIRRGDG 619
G++++ A TG+GKT+AY+ P I H+ + P + R G
Sbjct: 67 GRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHG 104
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 33.5 bits (73), Expect = 0.13
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +2
Query: 455 GLQRTDAHSSSRLADSYVGKNLVGVAQTGSGKTLAYILPAIVH-INNQPPIRRGDGPDCF 631
G+++ + L + G++++G A+TG+GKTLA+ +P I I RG P C
Sbjct: 123 GIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCL 182
Query: 632 GL 637
L
Sbjct: 183 VL 184
Score = 31.1 bits (67), Expect = 0.70
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +3
Query: 594 NRLFGEVMVPIALVLAPTRELAQQIQ 671
N G P+ LVLAPTRELA+Q++
Sbjct: 170 NAKHGRGRNPLCLVLAPTRELARQVE 195
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 33.5 bits (73), Expect = 0.13
Identities = 27/97 (27%), Positives = 50/97 (51%)
Frame = +3
Query: 381 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSERI*LA*PKRVPAKRWP 560
EVH + F+ + + +G+ G+++P+ IQ +G + + + + + +
Sbjct: 36 EVH---ESFDAMGLQENLLRGIYAYGFEKPSAIQQRGI-VPFCKGLDVIQQAQSGTGKTA 91
Query: 561 TSCQQLCT*ITNRLFGEVMVPIALVLAPTRELAQQIQ 671
T C+ + +L ++ ALVLAPTRELAQQI+
Sbjct: 92 T----FCSGVLQQLDYALLQCQALVLAPTRELAQQIE 124
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 33.1 bits (72), Expect = 0.17
Identities = 29/111 (26%), Positives = 54/111 (48%)
Frame = +3
Query: 339 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSERI 518
E + E S +VH + F+ + + +G+ G+++P+ IQ +G + + +
Sbjct: 22 EVLEGQDEFFTSYDDVH---ESFDAMGLQENLLRGIYAYGFEKPSAIQQRGI-VPFCKGL 77
Query: 519 *LA*PKRVPAKRWPTSCQQLCT*ITNRLFGEVMVPIALVLAPTRELAQQIQ 671
+ + + T C+ + +L ++ ALVLAPTRELAQQI+
Sbjct: 78 DVIQQAQSGTGKTAT----FCSGVLQQLDFSLIQCQALVLAPTRELAQQIE 124
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 32.7 bits (71), Expect = 0.23
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +2
Query: 509 GKNLVGVAQTGSGKTLAYILPAIVHINNQ 595
GK+ + Q+GSGKTLAY++P I + +
Sbjct: 411 GKSCIIADQSGSGKTLAYLVPVIQRLREE 439
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 32.7 bits (71), Expect = 0.23
Identities = 14/42 (33%), Positives = 28/42 (66%)
Frame = +2
Query: 452 NGLQRTDAHSSSRLADSYVGKNLVGVAQTGSGKTLAYILPAI 577
+G+ + + L++ GK+ + A+TG+GK++A++LPAI
Sbjct: 393 SGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAI 434
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 32.7 bits (71), Expect = 0.23
Identities = 14/42 (33%), Positives = 28/42 (66%)
Frame = +2
Query: 452 NGLQRTDAHSSSRLADSYVGKNLVGVAQTGSGKTLAYILPAI 577
+G+ + + L++ GK+ + A+TG+GK++A++LPAI
Sbjct: 346 SGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAI 387
>At3g14810.1 68416.m01871 mechanosensitive ion channel
domain-containing protein / MS ion channel
domain-containing protein contains Pfam profile PF00924:
Mechanosensitive ion channel
Length = 853
Score = 31.9 bits (69), Expect = 0.40
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
Frame = -3
Query: 264 QNPIWASHVLPSREFFFPTKASRSSKSIATVAKPRRIIAEFVASSKF-GTTVSTAIIPVT 88
QN +W VL + F F K R ++S A R ++ VA + T+ ++ +
Sbjct: 352 QNCLWLGLVLLAWHFLFDKKVERETRSTALRYVTRVLVCLLVALIIWLVKTILVKVLASS 411
Query: 87 RH--DYFSDLVEDVYLNYGFFLTQGPP 13
H YF + E ++ Y GPP
Sbjct: 412 FHMSTYFDRIQESLFTQYVIETLSGPP 438
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 31.9 bits (69), Expect = 0.40
Identities = 26/83 (31%), Positives = 45/83 (54%)
Frame = +3
Query: 423 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSERI*LA*PKRVPAKRWPTSCQQLCT*ITNRL 602
PD ++ G+ G+++P+ IQ +G I + + + + + T C+ + +L
Sbjct: 50 PDLLR-GIYAYGFEKPSAIQQRGI-IPFCKGLDVIQQAQSGTGKTAT----FCSGVLQQL 103
Query: 603 FGEVMVPIALVLAPTRELAQQIQ 671
++ ALVLAPTRELAQQI+
Sbjct: 104 DISLVQCQALVLAPTRELAQQIE 126
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 31.9 bits (69), Expect = 0.40
Identities = 18/33 (54%), Positives = 23/33 (69%), Gaps = 3/33 (9%)
Frame = +2
Query: 512 KNLVGVAQTGSGKTLAYILPAIVHI---NNQPP 601
K++V A TGSGKTLA++LP I I N+ PP
Sbjct: 54 KDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPP 86
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 31.9 bits (69), Expect = 0.40
Identities = 18/33 (54%), Positives = 23/33 (69%), Gaps = 3/33 (9%)
Frame = +2
Query: 512 KNLVGVAQTGSGKTLAYILPAIVHI---NNQPP 601
K++V A TGSGKTLA++LP I I N+ PP
Sbjct: 55 KDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPP 87
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 31.5 bits (68), Expect = 0.53
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +2
Query: 503 YVGKNLVGVAQTGSGKTLAYILPAIVHINNQ 595
+ G++ + AQTGSGKTL Y+L IN Q
Sbjct: 111 FTGRDCILHAQTGSGKTLTYLLLIFSLINPQ 141
>At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative several
putative ATP-dependent helicases
Length = 1058
Score = 31.5 bits (68), Expect = 0.53
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +2
Query: 416 KFS*LCATRCKDNGLQRTDAHSSSRLADSYVGKNLVGVAQTGSGKTLAYILP 571
K S + K GL +H + ++ + GKN+ T SGK+L Y +P
Sbjct: 377 KLSETTKSALKRIGLNTLYSHQAEAISAALAGKNVAVATMTSSGKSLCYNVP 428
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 30.7 bits (66), Expect = 0.92
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +2
Query: 491 LADSYVGKNLVGVAQTGSGKTLAYILPAIVHINNQ 595
L + G++++ A+TG+GKTLA+ +P I + +
Sbjct: 133 LVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEE 167
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/18 (66%), Positives = 16/18 (88%)
Frame = +3
Query: 618 VPIALVLAPTRELAQQIQ 671
+P LVLAPTRELA+Q++
Sbjct: 180 LPKFLVLAPTRELAKQVE 197
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 30.7 bits (66), Expect = 0.92
Identities = 13/22 (59%), Positives = 18/22 (81%)
Frame = +2
Query: 512 KNLVGVAQTGSGKTLAYILPAI 577
K++V + TGSGKTLAY+LP +
Sbjct: 150 KSVVLGSHTGSGKTLAYLLPIV 171
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 30.7 bits (66), Expect = 0.92
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = +2
Query: 509 GKNLVGVAQTGSGKTLAYILPAI 577
GK+L+ A TGSGKT ++++P I
Sbjct: 10 GKSLLASADTGSGKTASFLVPII 32
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = +3
Query: 621 PIALVLAPTRELAQQIQ 671
P+A+VLAPTREL Q++
Sbjct: 50 PLAMVLAPTRELCVQVE 66
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 30.3 bits (65), Expect = 1.2
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 3/114 (2%)
Frame = +3
Query: 333 EVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT-MGYKEPTPIQAQGWPIAMS 509
E E N VT SG + FE+ N + +G+ M +++P+ IQA P+ M+
Sbjct: 70 EEPEDSNIKAVT-SGDTPYTSASRFEDLNLSPELMKGLYVEMKFEKPSKIQAISLPMIMT 128
Query: 510 ERI*LA*PKRVPAKRWPTSCQQLCT*I--TNRLFGEVMVPIALVLAPTRELAQQ 665
K + A+ S + C + +R+ + P AL + PTRELA Q
Sbjct: 129 PP-----HKHLIAQAHNGSGKTTCFVLGMLSRVDPTLREPQALCICPTRELANQ 177
>At2g25460.1 68415.m03049 expressed protein
Length = 423
Score = 30.3 bits (65), Expect = 1.2
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = -2
Query: 214 SHQSLQILQIYCHRCQTETNYRRICCLLQIWNHRFHGYY 98
+H S + + + + + E + R+CC++ WN F+ +Y
Sbjct: 63 NHTSSKPIALGSNHVEWEEEFERVCCIVGPWNLSFNVFY 101
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +2
Query: 509 GKNLVGVAQTGSGKTLAYILPAIVHI 586
G + V + TGSGKTLAY+LP + I
Sbjct: 147 GHDAVIQSYTGSGKTLAYLLPILSEI 172
>At5g25520.2 68418.m03037 transcription elongation factor-related
contains weak similarity to transcription elongation
factors
Length = 997
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +2
Query: 443 CKDNGLQRTDAHSSSRLADSYVGKNLVGVAQTGSGKTLAYILPAI 577
CK NG+ ++ S +A SYV VG A+ SG L Y+ P +
Sbjct: 722 CK-NGISQSQRDSLIEVAKSYVADQRVGYAEPTSGVEL-YLCPTL 764
>At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = +3
Query: 294 YDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 470
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 471 TPIQAQGWPIAMSE 512
+P++ + P+ S+
Sbjct: 232 SPVRDEYAPVIFSQ 245
>At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1080
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = +3
Query: 294 YDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 470
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 195 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 254
Query: 471 TPIQAQGWPIAMSE 512
+P++ + P+ S+
Sbjct: 255 SPVRDEYAPVIFSQ 268
>At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = +3
Query: 294 YDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 470
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 471 TPIQAQGWPIAMSE 512
+P++ + P+ S+
Sbjct: 232 SPVRDEYAPVIFSQ 245
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +2
Query: 536 TGSGKTLAYILPAIVHINNQPPIR 607
TGSGKTL+Y LP IV + P+R
Sbjct: 71 TGSGKTLSYALP-IVQLLASRPVR 93
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +3
Query: 285 KNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQ 440
K D H +L P+E + + KH+V + VE ++ E+ F + VQ+
Sbjct: 161 KQIEDAHIAILT-CPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK 211
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +3
Query: 285 KNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQ 440
K D H +L P+E + + KH+V + VE ++ E+ F + VQ+
Sbjct: 237 KQIEDAHIAILT-CPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK 287
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +2
Query: 512 KNLVGVAQTGSGKTLAYILPAI 577
K++ A TGSGKTLA+++P +
Sbjct: 54 KDVAVDAATGSGKTLAFVVPLV 75
>At1g53470.1 68414.m06061 mechanosensitive ion channel
domain-containing protein / MS ion channel
domain-containing protein contains Pfam profile PF00924:
Mechanosensitive ion channel
Length = 881
Score = 27.9 bits (59), Expect = 6.5
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 3/87 (3%)
Frame = -3
Query: 264 QNPIWASHVLPSREFFFPTKASRSSKSIATVAKPRRIIAEFVASSKF-GTTVSTAIIPVT 88
QN +W VL + F F K R +S + +I VA + T+ ++ +
Sbjct: 342 QNCLWLGLVLIAWHFLFDKKVEREMRSTVLKYVTKVLICLLVAVIIWLIKTLLVKVLASS 401
Query: 87 RH--DYFSDLVEDVYLNYGFFLTQGPP 13
H YF + E ++ Y GPP
Sbjct: 402 FHMSTYFDRIQESLFTQYVIETLSGPP 428
>At5g64440.1 68418.m08095 amidase family protein low similarity to
enantiomerase-selective amidase [Rhodococcus sp.]
GI:152052; contains Pfam profile PF01425: Amidase
Length = 607
Score = 27.5 bits (58), Expect = 8.6
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +2
Query: 95 GIIAVETVVPNLEEATNSAIIRLGLATVAIDLEDLEALVGKKNSLEGRT 241
G VE VVP LEE + +I +G T++ EA K S + RT
Sbjct: 423 GCKVVEIVVPELEEMRAAHVISIGSPTLSSLTPYCEAGKNSKLSYDTRT 471
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/57 (22%), Positives = 27/57 (47%)
Frame = +3
Query: 234 AEHATPRWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQY 404
A+ A W++ +QP PHPT + +Y N +++ + + +NP+ +
Sbjct: 260 AQVANVSWNNPIMQPTGFYCAPPHPTPPPTNNLGYIQYMNGFDLSGTNISGYNPLAW 316
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,981,816
Number of Sequences: 28952
Number of extensions: 300412
Number of successful extensions: 1020
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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