Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060239.seq
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma...    31   0.11 
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re...    27   1.8  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    26   5.5  
SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr...    25   9.6  

>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 899

 Score = 31.5 bits (68), Expect = 0.11
 Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
 Frame = +1

Query: 250 FSVYNRSIRTH-STTVKRTDSSHRLKSQVV-DKRPR--RSLDSPRLDGYVLASSPIPHTD 417
           + V++  + T+ STT  +TDSS+     +V   +P    SLD  +L   + A  PI   +
Sbjct: 297 WEVFHDFMSTYASTTTSQTDSSYNDVHDIVGSSQPDYLESLDYSQLFSILYALYPINFLE 356

Query: 418 WNEELKLYAQSHGY 459
           +  + KLYA  H +
Sbjct: 357 FLRDPKLYASKHNF 370


>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
           related|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 773

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 122 DLKNSVDWNGSTRKLLRVLNKRAYRQVLQCNGRYYW 229
           D K++V   GS     R+ N+R++R   Q   +Y W
Sbjct: 730 DGKHNVVLGGSFATATRISNRRSFRNFYQAGYKYAW 765


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +2

Query: 38  NKMVFDVYYNGYYVEKKFSKEFLIHIAPDLKNSVDW 145
           N +V  VY NG     +F      HIAP+ +   DW
Sbjct: 301 NSVVSSVYMNGSNSVPRFILYSTTHIAPETEIIGDW 336


>SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 162

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = -3

Query: 300 PFDCCAVRANRSVVHRETNFVPSGQ*YLPLHCNTCL*ARLFKTRSSL 160
           PF C  V  N +V+    N VP G   +  H  T     + KTR  L
Sbjct: 31  PFGCIIVDENDNVIMSAGNRVPDGD--VTQHAETRAVGLITKTRRDL 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,326,353
Number of Sequences: 5004
Number of extensions: 41555
Number of successful extensions: 129
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)