Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060239.seq
         (656 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0272 - 23738514-23738817,23739382-23740748                       29   4.3  
06_03_1507 - 30646168-30646254,30646350-30646490,30648109-306482...    28   5.7  
02_04_0134 - 20109610-20109984                                         28   5.7  
01_03_0289 - 14725832-14726114,14726216-14726298,14726432-147265...    28   7.5  
09_06_0070 - 20670387-20670473,20672418-20672645,20673388-206735...    27   9.9  
08_01_0421 - 3735155-3736067,3736154-3736176                           27   9.9  
07_03_0262 + 15944259-15944514,15945524-15945597,15946320-159464...    27   9.9  

>05_05_0272 - 23738514-23738817,23739382-23740748
          Length = 556

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 328 QVVDKRPRRSLDSPRLDGYVLASSPIPHTDWN-EELKLY 441
           +++ + P +S+DS  LDGY   +  +    W+ EE K Y
Sbjct: 432 EIIFENPEKSMDSVHLDGYAFFAVGMGPGKWSAEERKTY 470


>06_03_1507 -
           30646168-30646254,30646350-30646490,30648109-30648202,
           30648445-30648509,30648934-30649176,30649442-30649499,
           30649957-30650037,30650323-30650533,30650975-30651141,
           30651216-30651268,30651600-30651681,30651765-30651914,
           30652027-30652111,30652189-30652393,30652502-30652573,
           30652911-30653456
          Length = 779

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
 Frame = +1

Query: 283 STTVKRTDSSHRLKSQVVDKRPRRSLDSPRLDGYVLA-----SSPIPHT 414
           S+T+ RT SS    +    KRPRR   +P  D  VLA       P PHT
Sbjct: 38  SSTLGRTRSSSSASATPNSKRPRRPPCTPESDPPVLALRAHTPDPDPHT 86


>02_04_0134 - 20109610-20109984
          Length = 124

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 154 HAQTAARFKQACLQTGVAVQRQILLARWHKVC 249
           +A + A  +QAC + G A Q + L  RW K C
Sbjct: 14  NAASRAERRQACSEQGAAKQARRLERRWAKQC 45


>01_03_0289 -
           14725832-14726114,14726216-14726298,14726432-14726545,
           14727830-14728199,14728726-14728856,14728970-14729078,
           14729257-14729378,14729522-14729625,14729849-14729953,
           14730034-14730192,14730336-14730391,14730576-14730627,
           14730725-14731031
          Length = 664

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
 Frame = +2

Query: 191 YRQVLQCNG---RYYWPDGTKFVSL 256
           +R+ L C G   R +WPD T+FV +
Sbjct: 498 HREALHCKGEEHRLFWPDQTEFVRM 522


>09_06_0070 -
           20670387-20670473,20672418-20672645,20673388-20673508,
           20673604-20673702,20673802-20673833
          Length = 188

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +3

Query: 279 AQHNSQTDRQLASIKKPGSRQTAAPFFRFSSFGRICFGIVA 401
           A+H +  DR L  ++      TA+      S GR CF  VA
Sbjct: 99  ARHEADIDRGLLQLRASAKDATASHLQAAVSLGRACFAEVA 139


>08_01_0421 - 3735155-3736067,3736154-3736176
          Length = 311

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +2

Query: 134 SVDWNGSTRKLLRVLNKRAYRQVLQCNGRYYWPDGTKFVSLCTT 265
           +V    STR  +  L    Y   L+C+ R++WP+GT     C++
Sbjct: 261 TVSGQASTRWKVGGLVPFKYWTRLRCDLRFFWPNGTAVDLSCSS 304


>07_03_0262 +
           15944259-15944514,15945524-15945597,15946320-15946400,
           15946621-15946713,15946946-15947014,15947578-15947697,
           15948342-15948413,15948624-15948701,15949463-15949654
          Length = 344

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 249 FLCVQQIYSHAQHNSQTDRQLASIKK 326
           F+   Q+YS  +  +Q DR L S+KK
Sbjct: 116 FILQSQLYSSVKDRTQVDRDLESLKK 141


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,418,557
Number of Sequences: 37544
Number of extensions: 260206
Number of successful extensions: 721
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)