Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060239.seq
         (656 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.27 
SB_51026| Best HMM Match : p450 (HMM E-Value=1.9e-13)                  30   1.4  
SB_28905| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_9897| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.8  
SB_38193| Best HMM Match : DUF1279 (HMM E-Value=4.5)                   28   7.7  

>SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2332

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 24/54 (44%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +1

Query: 253  SVYNRSIRTHSTTVKRTDS-SHRLKSQVVDKRPRRSLDS-PRLDGYVLASSPIP 408
            S+ NRS+   S  V +T S S R+ SQ VDK   RSLD    L+   L  SP P
Sbjct: 1557 SIANRSLHQSSKCVVQTRSCSPRISSQTVDKTYSRSLDEYLGLNSLHLPMSPSP 1610


>SB_51026| Best HMM Match : p450 (HMM E-Value=1.9e-13)
          Length = 336

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = +1

Query: 292 VKRTDSSHRLKSQVVDKRPRRSLDSPRLDGYVLASS 399
           VKR  ++ +L+  V++KR R   D  R DG VLA S
Sbjct: 59  VKRVQTAVKLRDDVLNKRFREHQDRLRGDGMVLAKS 94


>SB_28905| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 322

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +3

Query: 27  ICGVIKWCSTCTTTAIM-WKKNSLKS 101
           +CGVI +C++C   AIM W+   L++
Sbjct: 274 LCGVIAYCNSCFNPAIMFWRVGELQN 299


>SB_9897| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 589

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
 Frame = +1

Query: 127 EKQRRLERQHAQTAARFKQACLQTGVAVQ----RQILLARWHKVCFSVYNRSIRTHSTTV 294
           ++QR L R H   +A F     QT   VQ    RQ  L R H+   ++   S R    TV
Sbjct: 161 DRQRALYRPHQTDSAHFTDLTRQTARTVQTSPDRQHALYRPHQTDSALCTDSTRQTVRTV 220

Query: 295 KRT-DSSH 315
           + + DS+H
Sbjct: 221 QTSPDSAH 228



 Score = 28.3 bits (60), Expect = 5.8
 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
 Frame = +1

Query: 127 EKQRRLERQHAQTAARFKQACLQTGVAVQ----RQILLARWHKVCFSVYNRSIRTHSTTV 294
           ++QR L R H   +A F     QT   VQ    RQ  L R H+   ++   S R    TV
Sbjct: 341 DRQRALYRPHQTDSAHFTDLTRQTARTVQTSPDRQHALYRPHQTDSALCTDSTRQTVRTV 400

Query: 295 KRT-DSSH 315
           + + DS+H
Sbjct: 401 QTSPDSAH 408


>SB_38193| Best HMM Match : DUF1279 (HMM E-Value=4.5)
          Length = 351

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 307 SSHRLKSQVVDKRPRRSLDSPRLDGYVLASSPIPHTDW 420
           S+ +  S+ V +R  R    PRL+G V A   +  TDW
Sbjct: 201 SNAKQSSEQVIRRGHRECRQPRLEGGVDAHGHVMSTDW 238


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,574,620
Number of Sequences: 59808
Number of extensions: 325490
Number of successful extensions: 1044
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1041
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)