Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060239.seq
(656 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC105005-1|AAI05006.1| 773|Homo sapiens diacylglycerol kinase, ... 31 4.8
AC073258-1|AAS07533.1| 413|Homo sapiens unknown protein. 31 4.8
AB018261-1|BAA34438.1| 742|Homo sapiens KIAA0718 protein protein. 31 4.8
BC111735-1|AAI11736.1| 1024|Homo sapiens HDAC9 protein protein. 30 8.3
AY197371-1|AAO27363.1| 1069|Homo sapiens histone deacetylase 9 p... 30 8.3
AY032738-1|AAK66822.1| 879|Homo sapiens histone deacetylase 9a ... 30 8.3
AY032737-1|AAK66821.1| 1011|Homo sapiens histone deacetylase 9 p... 30 8.3
AK097178-1|BAC04971.1| 768|Homo sapiens protein ( Homo sapiens ... 30 8.3
AJ459808-1|CAD30851.1| 1066|Homo sapiens histone decetylase 9b p... 30 8.3
>BC105005-1|AAI05006.1| 773|Homo sapiens diacylglycerol kinase,
beta 90kDa protein.
Length = 773
Score = 30.7 bits (66), Expect = 4.8
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +1
Query: 286 TTVKRTDSSHRLKSQVVDKRPRRSLDSPRLDGYVLASSPIPHT 414
+TVK+ S + ++V+DK + +S +DG L +P+P T
Sbjct: 394 STVKKEKSGSQQPNKVIDKNKMQRANSVTVDGQGLQVTPVPGT 436
>AC073258-1|AAS07533.1| 413|Homo sapiens unknown protein.
Length = 413
Score = 30.7 bits (66), Expect = 4.8
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +1
Query: 286 TTVKRTDSSHRLKSQVVDKRPRRSLDSPRLDGYVLASSPIPHT 414
+TVK+ S + ++V+DK + +S +DG L +P+P T
Sbjct: 328 STVKKEKSGSQQPNKVIDKNKMQRANSVTVDGQGLQVTPVPGT 370
>AB018261-1|BAA34438.1| 742|Homo sapiens KIAA0718 protein protein.
Length = 742
Score = 30.7 bits (66), Expect = 4.8
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +1
Query: 286 TTVKRTDSSHRLKSQVVDKRPRRSLDSPRLDGYVLASSPIPHT 414
+TVK+ S + ++V+DK + +S +DG L +P+P T
Sbjct: 332 STVKKEKSGSQQPNKVIDKNKMQRANSVTVDGQGLQVTPVPGT 374
>BC111735-1|AAI11736.1| 1024|Homo sapiens HDAC9 protein protein.
Length = 1024
Score = 29.9 bits (64), Expect = 8.3
Identities = 19/67 (28%), Positives = 32/67 (47%)
Frame = -1
Query: 419 QSVCGMGDDAKTYPSKRGESKERRGRLSTTWLFNRCELSVRLTVVLCVRIDLLYTEKQTL 240
Q VCG ++ T+P G + RL T L N+CE ++ I L+++E +L
Sbjct: 603 QCVCG---NSTTHPEHAGRIQSIWSRLQETGLLNKCE-RIQGRKASLEEIQLVHSEHHSL 658
Query: 239 CHRANSI 219
+ N +
Sbjct: 659 LYGTNPL 665
>AY197371-1|AAO27363.1| 1069|Homo sapiens histone deacetylase 9
protein.
Length = 1069
Score = 29.9 bits (64), Expect = 8.3
Identities = 19/67 (28%), Positives = 32/67 (47%)
Frame = -1
Query: 419 QSVCGMGDDAKTYPSKRGESKERRGRLSTTWLFNRCELSVRLTVVLCVRIDLLYTEKQTL 240
Q VCG ++ T+P G + RL T L N+CE ++ I L+++E +L
Sbjct: 648 QCVCG---NSTTHPEHAGRIQSIWSRLQETGLLNKCE-RIQGRKASLEEIQLVHSEHHSL 703
Query: 239 CHRANSI 219
+ N +
Sbjct: 704 LYGTNPL 710
>AY032738-1|AAK66822.1| 879|Homo sapiens histone deacetylase 9a
protein.
Length = 879
Score = 29.9 bits (64), Expect = 8.3
Identities = 19/67 (28%), Positives = 32/67 (47%)
Frame = -1
Query: 419 QSVCGMGDDAKTYPSKRGESKERRGRLSTTWLFNRCELSVRLTVVLCVRIDLLYTEKQTL 240
Q VCG ++ T+P G + RL T L N+CE ++ I L+++E +L
Sbjct: 645 QCVCG---NSTTHPEHAGRIQSIWSRLQETGLLNKCE-RIQGRKASLEEIQLVHSEHHSL 700
Query: 239 CHRANSI 219
+ N +
Sbjct: 701 LYGTNPL 707
>AY032737-1|AAK66821.1| 1011|Homo sapiens histone deacetylase 9
protein.
Length = 1011
Score = 29.9 bits (64), Expect = 8.3
Identities = 19/67 (28%), Positives = 32/67 (47%)
Frame = -1
Query: 419 QSVCGMGDDAKTYPSKRGESKERRGRLSTTWLFNRCELSVRLTVVLCVRIDLLYTEKQTL 240
Q VCG ++ T+P G + RL T L N+CE ++ I L+++E +L
Sbjct: 645 QCVCG---NSTTHPEHAGRIQSIWSRLQETGLLNKCE-RIQGRKASLEEIQLVHSEHHSL 700
Query: 239 CHRANSI 219
+ N +
Sbjct: 701 LYGTNPL 707
>AK097178-1|BAC04971.1| 768|Homo sapiens protein ( Homo sapiens
cDNA FLJ39859 fis, clone SPLEN2015094, moderately
similar to Mus musculus histone deacetylase mHDA1 mRNA.
).
Length = 768
Score = 29.9 bits (64), Expect = 8.3
Identities = 19/67 (28%), Positives = 32/67 (47%)
Frame = -1
Query: 419 QSVCGMGDDAKTYPSKRGESKERRGRLSTTWLFNRCELSVRLTVVLCVRIDLLYTEKQTL 240
Q VCG ++ T+P G + RL T L N+CE ++ I L+++E +L
Sbjct: 623 QCVCG---NSTTHPEHAGRIQSIWSRLQETGLLNKCE-RIQGRKASLEEIQLVHSEHHSL 678
Query: 239 CHRANSI 219
+ N +
Sbjct: 679 LYGTNPL 685
>AJ459808-1|CAD30851.1| 1066|Homo sapiens histone decetylase 9b
protein.
Length = 1066
Score = 29.9 bits (64), Expect = 8.3
Identities = 19/67 (28%), Positives = 32/67 (47%)
Frame = -1
Query: 419 QSVCGMGDDAKTYPSKRGESKERRGRLSTTWLFNRCELSVRLTVVLCVRIDLLYTEKQTL 240
Q VCG ++ T+P G + RL T L N+CE ++ I L+++E +L
Sbjct: 645 QCVCG---NSTTHPEHAGRIQSIWSRLQETGLLNKCE-RIQGRKASLEEIQLVHSEHHSL 700
Query: 239 CHRANSI 219
+ N +
Sbjct: 701 LYGTNPL 707
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,620,019
Number of Sequences: 237096
Number of extensions: 1465798
Number of successful extensions: 2976
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2976
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7366354010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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