Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060239.seq
         (656 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ138878-1|ABA86484.1|  939|Drosophila melanogaster CG17075 prot...    29   5.6  
BT023900-1|ABA81834.1| 1576|Drosophila melanogaster LP13775p pro...    29   5.6  
AE014134-68|AAF51524.1|  968|Drosophila melanogaster CG17075-PA ...    29   5.6  
AE013599-1871|AAF58260.1|  856|Drosophila melanogaster CG13942-P...    29   5.6  
BT001338-1|AAN71093.1|  501|Drosophila melanogaster AT21229p pro...    28   9.7  
AE014297-4739|AAN14270.1|  501|Drosophila melanogaster CG31003-P...    28   9.7  

>DQ138878-1|ABA86484.1|  939|Drosophila melanogaster CG17075
           protein.
          Length = 939

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +3

Query: 189 PTDRCCSATADTIGPMAQSLFLCVQQIYSHAQHNSQTD-RQLASIKKPGSRQTAAPFFRF 365
           PT R  + T   +  +A++L         H+QHNSQT+ R L S      RQ    F R 
Sbjct: 799 PTRRKMNQTTQELAELAETLGFASN--LQHSQHNSQTNSRTLPSFGNVYRRQRRKHFLRT 856

Query: 366 SS 371
            S
Sbjct: 857 RS 858


>BT023900-1|ABA81834.1| 1576|Drosophila melanogaster LP13775p
           protein.
          Length = 1576

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 21/63 (33%), Positives = 24/63 (38%)
 Frame = +3

Query: 183 SVPTDRCCSATADTIGPMAQSLFLCVQQIYSHAQHNSQTDRQLASIKKPGSRQTAAPFFR 362
           +VPT R  SAT     PM   L L      +H QH+ Q  R       P  R    P  R
Sbjct: 718 AVPTRRTSSATE--YAPMRDKLLLQQAAALAHQQHHPQQHRHAQPPHVPPERPPKHPNLR 775

Query: 363 FSS 371
             S
Sbjct: 776 VPS 778


>AE014134-68|AAF51524.1|  968|Drosophila melanogaster CG17075-PA
            protein.
          Length = 968

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +3

Query: 189  PTDRCCSATADTIGPMAQSLFLCVQQIYSHAQHNSQTD-RQLASIKKPGSRQTAAPFFRF 365
            PT R  + T   +  +A++L         H+QHNSQT+ R L S      RQ    F R 
Sbjct: 822  PTRRKMNQTTQELAELAETLGFASN--LQHSQHNSQTNSRTLPSFGNVYRRQRRKHFLRT 879

Query: 366  SS 371
             S
Sbjct: 880  RS 881


>AE013599-1871|AAF58260.1|  856|Drosophila melanogaster CG13942-PA
           protein.
          Length = 856

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 21/63 (33%), Positives = 24/63 (38%)
 Frame = +3

Query: 183 SVPTDRCCSATADTIGPMAQSLFLCVQQIYSHAQHNSQTDRQLASIKKPGSRQTAAPFFR 362
           +VPT R  SAT     PM   L L      +H QH+ Q  R       P  R    P  R
Sbjct: 656 AVPTRRTSSATE--YAPMRDKLLLQQAAALAHQQHHPQQHRHAQPPHVPPERPPKHPNLR 713

Query: 363 FSS 371
             S
Sbjct: 714 VPS 716


>BT001338-1|AAN71093.1|  501|Drosophila melanogaster AT21229p
           protein.
          Length = 501

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +1

Query: 283 STTVKRTDSSHRLKSQVVDKRPRRSLDSPRLDGYVLASSPIP 408
           S+T K   ++HR ++   ++ PR++ DS +     L+ SP P
Sbjct: 362 SSTTKEPSAAHRNRNTAGEESPRKTEDSQKPATAALSKSPGP 403


>AE014297-4739|AAN14270.1|  501|Drosophila melanogaster CG31003-PA
           protein.
          Length = 501

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +1

Query: 283 STTVKRTDSSHRLKSQVVDKRPRRSLDSPRLDGYVLASSPIP 408
           S+T K   ++HR ++   ++ PR++ DS +     L+ SP P
Sbjct: 362 SSTTKEPSAAHRNRNTAGEESPRKTEDSQKPATAALSKSPGP 403


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,772,991
Number of Sequences: 53049
Number of extensions: 459405
Number of successful extensions: 1318
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1318
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2806815600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)