Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060239.seq
         (656 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74476-6|CAA98967.1| 1139|Caenorhabditis elegans Hypothetical pr...    31   0.54 
Z74473-6|CAA98951.1| 1139|Caenorhabditis elegans Hypothetical pr...    31   0.54 
U20168-1|AAA66364.1| 1139|Caenorhabditis elegans Lin-25 protein ...    31   0.54 
AL132952-5|CAB61137.1|  498|Caenorhabditis elegans Hypothetical ...    29   3.8  
L23645-3|AAK26139.1|  211|Caenorhabditis elegans Zinc finger pro...    28   6.7  

>Z74476-6|CAA98967.1| 1139|Caenorhabditis elegans Hypothetical
           protein F56H9.5 protein.
          Length = 1139

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +2

Query: 62  YNGYYVEKKFSKEFLIHIAPDLKNSVDWNGSTRKLLRVLNKRAYRQVLQC 211
           YNG Y++  F ++ L+ +  D   S+ WN     ++     R Y + LQC
Sbjct: 57  YNGTYIDDVF-RDHLLKLVVD--KSITWNQVIHSVINTKTDRIYSKCLQC 103


>Z74473-6|CAA98951.1| 1139|Caenorhabditis elegans Hypothetical
           protein F56H9.5 protein.
          Length = 1139

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +2

Query: 62  YNGYYVEKKFSKEFLIHIAPDLKNSVDWNGSTRKLLRVLNKRAYRQVLQC 211
           YNG Y++  F ++ L+ +  D   S+ WN     ++     R Y + LQC
Sbjct: 57  YNGTYIDDVF-RDHLLKLVVD--KSITWNQVIHSVINTKTDRIYSKCLQC 103


>U20168-1|AAA66364.1| 1139|Caenorhabditis elegans Lin-25 protein
           protein.
          Length = 1139

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +2

Query: 62  YNGYYVEKKFSKEFLIHIAPDLKNSVDWNGSTRKLLRVLNKRAYRQVLQC 211
           YNG Y++  F ++ L+ +  D   S+ WN     ++     R Y + LQC
Sbjct: 57  YNGTYIDDVF-RDHLLKLVVD--KSITWNQVIHSVINTKTDRIYSKCLQC 103


>AL132952-5|CAB61137.1|  498|Caenorhabditis elegans Hypothetical
           protein Y51H4A.5 protein.
          Length = 498

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 648 FIIIFNTCFFK*NXLYITK*SFIIFNTCFIVFLI 547
           F   FNTC F+ N ++    + + F T  + FLI
Sbjct: 145 FFACFNTCIFRSNRIFFNSAANLNFATILVFFLI 178


>L23645-3|AAK26139.1|  211|Caenorhabditis elegans Zinc finger
           protein protein 1,isoform b protein.
          Length = 211

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +1

Query: 259 YNRSIRTHSTTVKRTDSSHRLKSQVVDKRPRRSLDSP 369
           +NR++   +   KR D+ HR ++  +  R + SL +P
Sbjct: 39  HNRTLLKRTVGGKRKDTGHRHRTSTIPPRDKSSLHAP 75


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,078,991
Number of Sequences: 27780
Number of extensions: 245903
Number of successful extensions: 639
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)