Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060239.seq
         (656 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g19930.1 68414.m02498 kelch repeat-containing F-box family pr...    30   1.6  
At5g62760.2 68418.m07879 nuclear protein ZAP-related similar to ...    29   3.6  
At5g62760.1 68418.m07878 nuclear protein ZAP-related similar to ...    29   3.6  
At3g12500.1 68416.m01556 basic endochitinase identical to basic ...    28   4.8  

>At1g19930.1 68414.m02498 kelch repeat-containing F-box family
           protein contains F-box domain Pfam:PF00646 and Kelch
           motif Pfam:PF01344
          Length = 344

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +1

Query: 340 KRPRRSLDSPRLDGYVLASSPIPHT 414
           +RP  + D+ +  GYVLA+ PIPH+
Sbjct: 84  RRPILASDTRKSSGYVLATIPIPHS 108


>At5g62760.2 68418.m07879 nuclear protein ZAP-related similar to
           nuclear protein ZAP, Mus musculus, EMBL:AB033168 this
           cDNA provides a truncated ORF likely due to a skipped
           exon. An alternative ORF is provided.
          Length = 383

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 8/50 (16%)
 Frame = +1

Query: 334 VDKRPRRSLDSPRLD-------GYVLASSPIPHTDWNEELKL-YAQSHGY 459
           VD+   RS    R+D       GY ++ SP P   W  E +L   + HGY
Sbjct: 102 VDREADRSYKRARIDTIAGGSPGYGVSESPSPRISWENERRLKMVRDHGY 151


>At5g62760.1 68418.m07878 nuclear protein ZAP-related similar to
           nuclear protein ZAP, Mus musculus, EMBL:AB033168 this
           cDNA provides a truncated ORF likely due to a skipped
           exon. An alternative ORF is provided.
          Length = 661

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 8/50 (16%)
 Frame = +1

Query: 334 VDKRPRRSLDSPRLD-------GYVLASSPIPHTDWNEELKL-YAQSHGY 459
           VD+   RS    R+D       GY ++ SP P   W  E +L   + HGY
Sbjct: 102 VDREADRSYKRARIDTIAGGSPGYGVSESPSPRISWENERRLKMVRDHGY 151


>At3g12500.1 68416.m01556 basic endochitinase identical to basic
           endochitinase precursor SP:P19171 from [Arabidopsis
           thaliana]
          Length = 322

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/46 (23%), Positives = 19/46 (41%)
 Frame = -1

Query: 455 PWLWAYSFNSSFQSVCGMGDDAKTYPSKRGESKERRGRLSTTWLFN 318
           P+ W Y F           + + T+P   G+    RG +  +W +N
Sbjct: 150 PYSWGYCFKQEQNPASDYCEPSATWPCASGKRYYGRGPMQLSWNYN 195


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,842,237
Number of Sequences: 28952
Number of extensions: 212591
Number of successful extensions: 603
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)