Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060238.seq
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.12 |||conserved eukaryotic protein|Schizosaccharomyces ...    26   4.1  
SPCC1795.10c |||Sed5 Vesicle Protein Svp26 |Schizosaccharomyces ...    26   5.5  
SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual    25   7.2  
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    25   9.5  

>SPAC11E3.12 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 162

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 355 RNIVTCYGFTIDVNGSRSSCFPG 423
           R++ T YGF ++  G   +CF G
Sbjct: 110 RSVATKYGFDVENTGCLGNCFQG 132


>SPCC1795.10c |||Sed5 Vesicle Protein Svp26 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 227

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -3

Query: 125 FFQDTVIFLL*FSGYSMWIQWLSLLSGY 42
           F    ++FL+ F G+  W+   S+ S Y
Sbjct: 51  FIMAVMVFLVIFDGFPFWLSAFSIFSHY 78


>SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 273

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 130 FPSFRIQXXXXFDSVDIVCGYSG 62
           +P F ++     + VDI CGY G
Sbjct: 71  YPDFDVESNKKVEIVDIGCGYGG 93


>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 89  SGYSMWIQWLSLLSGYGG*VFFQDTVVLV 3
           +G +MW  W  L  GY   +F + T+VLV
Sbjct: 281 AGENMWSSWKHLTQGYDH-LFKKVTIVLV 308


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,095,319
Number of Sequences: 5004
Number of extensions: 32986
Number of successful extensions: 56
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)