Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060237.seq
(671 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc... 105 4e-24
SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomy... 74 2e-14
SPCC1795.04c |||20S proteasome component alpha 7|Schizosaccharom... 63 3e-11
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc... 61 1e-10
SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha 3|Sch... 55 8e-09
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 54 2e-08
SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyc... 54 2e-08
SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyc... 30 0.26
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces... 29 0.61
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 27 2.5
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo... 27 3.3
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 26 4.3
SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr ... 26 5.7
SPAC23D3.07 |pup1||20S proteasome component beta 2|Schizosacchar... 26 5.7
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 25 9.9
>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
Pre5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 105 bits (253), Expect = 4e-24
Identities = 47/64 (73%), Positives = 55/64 (85%)
Frame = +1
Query: 58 MFRNQYDSDVTVWSPQGRLHQVEYAMEAVKLGSATIGLKNKDYAVLIALKRAVSELSAYQ 237
MFRNQYD D T WSPQGRLHQVEYA+EA+K GSAT+GL +K +AVL+ALKR ELS+YQ
Sbjct: 1 MFRNQYDGDATTWSPQGRLHQVEYALEAIKQGSATVGLVSKTHAVLVALKRNAEELSSYQ 60
Query: 238 KKII 249
KK+I
Sbjct: 61 KKLI 64
Score = 99 bits (238), Expect = 3e-22
Identities = 47/107 (43%), Positives = 66/107 (61%)
Frame = +3
Query: 198 SVETRCERIVRISEENYSYDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGR 377
+++ E + ++ D+HIGI+I+GL DAR+LS YM+ E L+ + P+PV R
Sbjct: 48 ALKRNAEELSSYQKKLIRIDDHIGIAIAGLAPDARVLSNYMKQEALSSKTLFTRPIPVRR 107
Query: 378 LISSVGNKMQICTQRYDKRPLGVGLLVAGYDDQGPHIYQTCPSATTL 518
L+S V K QI TQ Y +RP GVG LV GYD+ GPH+ + PS L
Sbjct: 108 LMSKVAEKAQINTQEYGRRPYGVGFLVIGYDESGPHLLEFQPSGLVL 154
Score = 56.0 bits (129), Expect = 5e-09
Identities = 25/46 (54%), Positives = 36/46 (78%)
Frame = +2
Query: 533 AIGARSQSARTYLEKHLNTFMDCDLQELVAHGLRALRDTLPNEVDL 670
++G+RSQSARTY+E++L+TF D +EL+ LRALRDTL + +L
Sbjct: 160 SMGSRSQSARTYIERNLDTFPDSSREELILSALRALRDTLSKDQEL 205
>SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 247
Score = 73.7 bits (173), Expect = 2e-14
Identities = 37/98 (37%), Positives = 56/98 (57%), Gaps = 6/98 (6%)
Frame = +3
Query: 237 EENYSYDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGN------ 398
E+ + D HIG +ISGLTADAR + + R + NHR+++D P + S+ +
Sbjct: 65 EKLFEIDSHIGCAISGLTADARTIIEHARVQTQNHRFTYDEPQGIESTTQSICDLALRFG 124
Query: 399 KMQICTQRYDKRPLGVGLLVAGYDDQGPHIYQTCPSAT 512
+ + +R RP GV LL+AG D+ GP +Y + PS T
Sbjct: 125 EGEDGEERIMSRPFGVALLIAGIDEHGPQLYHSEPSGT 162
Score = 65.7 bits (153), Expect = 6e-12
Identities = 32/56 (57%), Positives = 39/56 (69%)
Frame = +1
Query: 58 MFRNQYDSDVTVWSPQGRLHQVEYAMEAVKLGSATIGLKNKDYAVLIALKRAVSEL 225
M R++YD V +SP+GRL QVEYA+EA+KLGS IG+K KD VL KR S L
Sbjct: 3 MTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKDAVVLGVEKRLTSPL 58
Score = 27.5 bits (58), Expect = 1.9
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +2
Query: 512 YFDCRAMAIGARSQSARTYLEKHLNTFMDCDLQELVAHGLRALRDTLPNEVD 667
YF A AIG+ S+ A++ L K + D L+E L+ LR + ++D
Sbjct: 163 YFRYEAKAIGSGSEPAKSELVKEFH--KDMTLEEAEVLILKVLRQVMEEKLD 212
>SPCC1795.04c |||20S proteasome component alpha
7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 253
Score = 63.3 bits (147), Expect = 3e-11
Identities = 31/93 (33%), Positives = 50/93 (53%)
Frame = +3
Query: 228 RISEENYSYDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQ 407
R++ S D HIGI+ +G D + + + R E + R ++ +P+P + +GN +Q
Sbjct: 61 RVNNRIGSVDRHIGIATTGFIPDGQHIVKRARDEATSWRDNYGSPIPGTVIADRLGNYVQ 120
Query: 408 ICTQRYDKRPLGVGLLVAGYDDQGPHIYQTCPS 506
+ T RP GV VA YD +GPH+Y P+
Sbjct: 121 LFTCYSSVRPFGVMSFVATYDSEGPHLYMVEPN 153
Score = 40.3 bits (90), Expect = 2e-04
Identities = 20/42 (47%), Positives = 30/42 (71%)
Frame = +1
Query: 94 WSPQGRLHQVEYAMEAVKLGSATIGLKNKDYAVLIALKRAVS 219
+SP GRL Q EYA +AV+ S IG+K +D V++AL++ V+
Sbjct: 14 FSPDGRLFQAEYAYKAVENASTCIGIKCED-GVILALEKVVT 54
>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 61.3 bits (142), Expect = 1e-10
Identities = 33/86 (38%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Frame = +3
Query: 255 DEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQICTQRYDKR 434
D H+ ++ +GL ADAR+L R E NH+ + P+ + L V Q TQ R
Sbjct: 67 DNHVCLAFAGLNADARILIDKARVEAQNHKLNLADPVSIEYLTRYVAGVQQKYTQSGGVR 126
Query: 435 PLGVGLLVAGYD--DQGPHIYQTCPS 506
P GV L+AG+D D P +YQT P+
Sbjct: 127 PFGVSTLIAGFDVGDNTPRVYQTEPA 152
Score = 44.0 bits (99), Expect = 2e-05
Identities = 21/51 (41%), Positives = 32/51 (62%)
Frame = +1
Query: 73 YDSDVTVWSPQGRLHQVEYAMEAVKLGSATIGLKNKDYAVLIALKRAVSEL 225
YD ++V+SP GRL QVEY EAV+ G+ I L+ + V+ ++ V +L
Sbjct: 4 YDRALSVFSPDGRLLQVEYGQEAVRRGTTAIALRGNECIVIGVERKNVPKL 54
Score = 25.4 bits (53), Expect = 7.5
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 524 RAMAIGARSQSARTYLEKH 580
+A AIG S++AR YLEK+
Sbjct: 159 KATAIGRASKAAREYLEKN 177
>SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 55.2 bits (127), Expect = 8e-09
Identities = 25/51 (49%), Positives = 35/51 (68%)
Frame = +1
Query: 73 YDSDVTVWSPQGRLHQVEYAMEAVKLGSATIGLKNKDYAVLIALKRAVSEL 225
YDS T++SP+GRL+QVEYA+EA+ +G+ KD VL A K+ S+L
Sbjct: 5 YDSRTTIFSPEGRLYQVEYALEAINHAGVALGIVAKDGIVLAAEKKVTSKL 55
Score = 50.4 bits (115), Expect = 2e-07
Identities = 39/125 (31%), Positives = 62/125 (49%), Gaps = 9/125 (7%)
Frame = +3
Query: 159 NHWSEE*GLCGVDSVETRCERIV--RISEENYSYDE--HIG----ISISGLTADARMLSR 314
NH G+ D + E+ V ++ E+ S ++ HIG +++GLTADA +L
Sbjct: 29 NHAGVALGIVAKDGIVLAAEKKVTSKLLEQEESAEKLYHIGDNMLCAVAGLTADANILIN 88
Query: 315 YMRTECLNHRYSHDAPMPVGRLISSVGNKMQICTQRYDKRPLGVGLLVAGYDD-QGPHIY 491
Y R + + + MP +L+ V + Q TQ RP GV L AG+D +G ++
Sbjct: 89 YARRVGQQYLQTFNEEMPCEQLVRRVCDLKQGYTQYGGLRPFGVSFLYAGWDHIRGYQLF 148
Query: 492 QTCPS 506
Q+ PS
Sbjct: 149 QSNPS 153
>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 54.0 bits (124), Expect = 2e-08
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Frame = +3
Query: 264 IGISISGLTADARML-SRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQICTQRYDKRPL 440
IG+ SG+ D R+L + + ++ ++ P L+ + + MQ TQ RP
Sbjct: 71 IGMVYSGMGPDFRVLVDKSRKVAQTTYKKIYNEYPPTKILVQEIASVMQESTQSGGVRPF 130
Query: 441 GVGLLVAGYDDQGPHIYQTCPSAT 512
GV LLVAG D++GP +YQ PS T
Sbjct: 131 GVSLLVAGMDEKGPSLYQVDPSGT 154
Score = 48.4 bits (110), Expect = 9e-07
Identities = 22/54 (40%), Positives = 34/54 (62%)
Frame = +1
Query: 67 NQYDSDVTVWSPQGRLHQVEYAMEAVKLGSATIGLKNKDYAVLIALKRAVSELS 228
++Y +T +SP G+L Q+EYA+ AV G ++G+K D VL K+ SEL+
Sbjct: 3 DKYAFSLTTFSPNGKLVQIEYALNAVNAGVTSVGIKATDGVVLATEKKPTSELA 56
Score = 35.9 bits (79), Expect = 0.005
Identities = 19/51 (37%), Positives = 30/51 (58%)
Frame = +2
Query: 512 YFDCRAMAIGARSQSARTYLEKHLNTFMDCDLQELVAHGLRALRDTLPNEV 664
YF +A AIG S +A+T+LEK N + +L + V + AL++T E+
Sbjct: 155 YFAWKATAIGKSSTAAKTFLEKRYND--ELELDDAVHTAILALKETFEGEL 203
>SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 244
Score = 54.0 bits (124), Expect = 2e-08
Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Frame = +3
Query: 264 IGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQICTQRYDKRPLG 443
IG ++G ADAR R+E Y + PMP L + N Q+ TQR RPLG
Sbjct: 74 IGCVMTGSIADARAQVSRARSEAAEFEYKNGYPMPCDVLAKRMANIAQVSTQRAAMRPLG 133
Query: 444 VGLLVAGYDDQ-GPHIYQTCPS 506
V + + DD+ GP +++ P+
Sbjct: 134 VAMTLVAVDDEIGPSLFKLDPA 155
Score = 45.2 bits (102), Expect = 9e-06
Identities = 21/52 (40%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Frame = +1
Query: 73 YDSDVTVWSPQGRLHQVEYAMEAV-KLGSATIGLKNKDYAVLIALKRAVSEL 225
+D +TV+SP+GRL+QVEYA +A G ++G+ K+ A +I+ K+ +L
Sbjct: 7 FDRTITVFSPEGRLYQVEYAFKAFNNAGITSVGVTGKNCACVISQKKVPDKL 58
>SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 30.3 bits (65), Expect = 0.26
Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Frame = +3
Query: 228 RISEENYSYDEHIGISISGLTADARMLSRYMRTECLNHR--YSHDAPMPVGRLISSVGNK 401
R++++ ++I SG AD + ++ ++ +R + HD + ++S
Sbjct: 53 RVTDKLTQLTDNIWCCRSGSAADTQTVADLLKYYLSMYRIQFGHDPSVHTAATLAS---- 108
Query: 402 MQICTQRYDKRPLGVGLLVAGYDDQ-GPHIY 491
++C Q +K L GL+VAGYD++ G +Y
Sbjct: 109 -EMCYQ--NKNMLSAGLIVAGYDEKTGGDVY 136
>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 497
Score = 29.1 bits (62), Expect = 0.61
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +2
Query: 476 RTSYLPDLSVSNYFDCRAMAIGARSQSARTYLEKHLNTFMDCDL 607
RTSYL LS+ N F + R+Q + L FMDC++
Sbjct: 448 RTSYLCVLSLQNVFASNSKEFKLRAQIESHFGRLMLEHFMDCNV 491
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 27.1 bits (57), Expect = 2.5
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3
Query: 216 ERIVRISEENYSYDEHIGISI 278
E + ++ EE Y YD HIG ++
Sbjct: 650 ENLHKLEEERYEYDRHIGANM 670
>SPBC16A3.11 |eso1||sister chromatid cohesion protein
Eso1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 26.6 bits (56), Expect = 3.3
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 213 CERIVRISEENYSYDEHIGISIS 281
CE+ + +SE N D HI +SIS
Sbjct: 543 CEQKITLSERNEHEDYHIALSIS 565
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 26.2 bits (55), Expect = 4.3
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 156 CNHWSEE*GLCGVDSVETRCERIVRISEENY 248
C E+ LCG +S+ RC I +++ E +
Sbjct: 306 CTATVEKFCLCGKESIHARCSNISKVNTEPF 336
>SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 450
Score = 25.8 bits (54), Expect = 5.7
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -2
Query: 208 VSTLSTPHSPYSSDQWLQNQVSQLPL 131
++T P S Y S +W + QLPL
Sbjct: 236 IATSEQPISAYHSGEWFEKPSEQLPL 261
>SPAC23D3.07 |pup1||20S proteasome component beta
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 25.8 bits (54), Expect = 5.7
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = +3
Query: 438 LGVGLLVAGYDDQGPHIY 491
+G L++ GYD +GPH++
Sbjct: 129 IGAYLVLGGYDCKGPHLF 146
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 25.0 bits (52), Expect = 9.9
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = -2
Query: 202 TLSTPHSPYSSDQWLQNQVSQLPLH 128
T ++P++ S QW+++ V Q P+H
Sbjct: 253 TTTSPNAIIRSVQWIRSFVPQAPIH 277
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,756,403
Number of Sequences: 5004
Number of extensions: 56508
Number of successful extensions: 174
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -