Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060237.seq
(671 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0268 + 1784781-1785056,1787314-1787394,1787395-1787856 87 9e-18
11_06_0394 - 23084485-23084577,23084677-23084802,23085134-230852... 76 3e-14
05_05_0306 - 23977543-23977614,23977709-23977799,23978296-239783... 68 8e-12
03_03_0187 + 15253000-15253207,15253281-15253370,15254338-152544... 66 3e-11
02_05_0057 + 25472872-25472912,25473012-25473157,25474008-254740... 66 3e-11
08_02_1495 + 27526008-27526390,27526462-27526876,27529162-27529323 65 4e-11
06_01_0539 + 3869156-3869908 61 7e-10
06_01_0529 + 3831100-3831852 61 7e-10
06_01_0479 + 3419657-3420337 61 7e-10
09_06_0102 + 20870346-20870518,20870599-20871013,20872180-20872341 61 9e-10
03_01_0568 - 4192514-4192606,4192694-4192753,4192837-4192932,419... 58 6e-09
01_06_1091 + 34464923-34465026,34465124-34465163,34465245-344653... 56 3e-08
06_01_0387 - 2770387-2770514,2770963-2771063,2771152-2771255,277... 30 1.9
12_01_1028 + 10541350-10541685,10542140-10542828,10542896-10542998 28 5.9
01_05_0154 + 18667338-18670110,18670233-18670561,18670914-186709... 28 7.8
>02_01_0268 + 1784781-1785056,1787314-1787394,1787395-1787856
Length = 272
Score = 87.4 bits (207), Expect = 9e-18
Identities = 48/110 (43%), Positives = 65/110 (59%), Gaps = 27/110 (24%)
Frame = +3
Query: 258 EHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQ---------I 410
+H G++++GLTAD R+LSR++R+EC+NH + +DAP+PV RL + +K Q I
Sbjct: 43 DHAGVALAGLTADGRVLSRFLRSECINHAFVYDAPLPVSRLALRLADKAQPDMYIFGITI 102
Query: 411 C------------------TQRYDKRPLGVGLLVAGYDDQGPHIYQTCPS 506
C TQR KRP GVGLLVAG D+ G H+Y CPS
Sbjct: 103 CPTTFLWIMSVSLMVLQVCTQRSWKRPYGVGLLVAGLDESGAHLYYNCPS 152
Score = 49.6 bits (113), Expect = 2e-06
Identities = 21/51 (41%), Positives = 35/51 (68%)
Frame = +2
Query: 509 NYFDCRAMAIGARSQSARTYLEKHLNTFMDCDLQELVAHGLRALRDTLPNE 661
NYF+ +A AIG+RSQ+A+T+LE+ + D ++L+ L A+++TL E
Sbjct: 154 NYFEYQAFAIGSRSQAAKTFLERRFEGYNDYTPEQLIKDALSAIKETLQGE 204
Score = 47.6 bits (108), Expect = 9e-06
Identities = 21/38 (55%), Positives = 31/38 (81%)
Frame = +1
Query: 133 MEAVKLGSATIGLKNKDYAVLIALKRAVSELSAYQKKI 246
MEAVK GSA +GL+++ +AVL A +A SELS++Q+K+
Sbjct: 1 MEAVKQGSACVGLRSRTHAVLAAANKAASELSSHQRKV 38
>11_06_0394 -
23084485-23084577,23084677-23084802,23085134-23085236,
23085895-23085953,23086418-23086519,23086601-23086714,
23087666-23087746,23088073-23088154,23088504-23088556
Length = 270
Score = 75.8 bits (178), Expect = 3e-14
Identities = 40/95 (42%), Positives = 54/95 (56%), Gaps = 3/95 (3%)
Frame = +3
Query: 237 EENYSYDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPV---GRLISSVGNKMQ 407
E+ DEHIG ++SGL ADAR L + R E NHR+S+ PM V + I + +
Sbjct: 78 EKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQAICDLALRFG 137
Query: 408 ICTQRYDKRPLGVGLLVAGYDDQGPHIYQTCPSAT 512
+ RP GV LL+AG+D+ GP +Y T PS T
Sbjct: 138 EGDEESMSRPFGVSLLIAGHDENGPSLYYTDPSGT 172
Score = 64.5 bits (150), Expect = 7e-11
Identities = 31/52 (59%), Positives = 36/52 (69%)
Frame = +1
Query: 70 QYDSDVTVWSPQGRLHQVEYAMEAVKLGSATIGLKNKDYAVLIALKRAVSEL 225
+YD V +SP+GRL QVEYA+EA+KLGS IGLK KD VL KR S L
Sbjct: 20 EYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKDGVVLAVEKRVTSPL 71
>05_05_0306 -
23977543-23977614,23977709-23977799,23978296-23978361,
23978399-23978479,23979130-23979176,23979408-23979492,
23979570-23979656,23979728-23979801,23980083-23980166,
23980259-23980298,23980386-23980489
Length = 276
Score = 67.7 bits (158), Expect = 8e-12
Identities = 32/106 (30%), Positives = 55/106 (51%)
Frame = +3
Query: 189 GVDSVETRCERIVRISEENYSYDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMP 368
GV+ + T + + +S H G++++GL AD R + ++E ++ + PMP
Sbjct: 49 GVEKLVTSKMILKGSNRRLHSVHRHSGLAVAGLAADGRQIVSRAKSEAASYEKVYGEPMP 108
Query: 369 VGRLISSVGNKMQICTQRYDKRPLGVGLLVAGYDDQGPHIYQTCPS 506
V L V + + +CT + RP G G+++ GYD GP +Y PS
Sbjct: 109 VKELADRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPS 154
Score = 44.8 bits (101), Expect = 6e-05
Identities = 23/51 (45%), Positives = 30/51 (58%)
Frame = +1
Query: 73 YDSDVTVWSPQGRLHQVEYAMEAVKLGSATIGLKNKDYAVLIALKRAVSEL 225
YD VT +SP GR+ QVEYA +AV +G+K KD VL K S++
Sbjct: 8 YDLSVTTFSPDGRVFQVEYAGKAVDNSGTVVGIKCKDGIVLGVEKLVTSKM 58
>03_03_0187 +
15253000-15253207,15253281-15253370,15254338-15254402,
15254489-15254535,15255195-15255270,15255432-15255499,
15255793-15255862,15256024-15256109,15256328-15256390,
15256472-15256537,15256938-15256986
Length = 295
Score = 65.7 bits (153), Expect = 3e-11
Identities = 34/88 (38%), Positives = 47/88 (53%)
Frame = +3
Query: 249 SYDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQICTQRYD 428
S +IG+ SG+ D R+L R R + + + +PV +L+ MQ TQ
Sbjct: 127 SLTPNIGVVYSGMGPDFRVLVRKSRKQAQQYYRLYKETIPVTQLVRETAAVMQEFTQSGG 186
Query: 429 KRPLGVGLLVAGYDDQGPHIYQTCPSAT 512
RP GV LL+AGYDD GP +YQ PS +
Sbjct: 187 VRPFGVSLLIAGYDDNGPQLYQVDPSGS 214
Score = 31.9 bits (69), Expect = 0.48
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 6/38 (15%)
Frame = +1
Query: 79 SDVTVW------SPQGRLHQVEYAMEAVKLGSATIGLK 174
SD VW SP G+L Q+E+A+ AV G ++G+K
Sbjct: 32 SDALVWLPFRCCSPSGKLVQIEHALTAVGSGQTSLGIK 69
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 509 NYFDCRAMAIGARSQSARTYLEKHLNTFMDCD 604
+YF +A A+G +A+T+LEK M+ D
Sbjct: 214 SYFSWKASAMGKNVSNAKTFLEKRYTEDMELD 245
>02_05_0057 +
25472872-25472912,25473012-25473157,25474008-25474072,
25474182-25474228,25474922-25474997,25475176-25475243,
25475862-25475931,25476178-25476263,25476418-25476480,
25476556-25476621,25476740-25476788
Length = 258
Score = 65.7 bits (153), Expect = 3e-11
Identities = 34/88 (38%), Positives = 47/88 (53%)
Frame = +3
Query: 249 SYDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQICTQRYD 428
S +IG+ SG+ D R+L R R + + + +PV +L+ MQ TQ
Sbjct: 90 SLTPNIGVVYSGMGPDFRVLVRKSRKQAQQYYRLYKETIPVTQLVRETAAVMQEFTQSGG 149
Query: 429 KRPLGVGLLVAGYDDQGPHIYQTCPSAT 512
RP GV LL+AGYDD GP +YQ PS +
Sbjct: 150 VRPFGVSLLIAGYDDNGPQLYQVDPSGS 177
Score = 37.9 bits (84), Expect = 0.007
Identities = 15/36 (41%), Positives = 25/36 (69%)
Frame = +1
Query: 67 NQYDSDVTVWSPQGRLHQVEYAMEAVKLGSATIGLK 174
+QY +T +SP G+L Q+E+A+ AV G ++G+K
Sbjct: 4 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIK 39
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 509 NYFDCRAMAIGARSQSARTYLEKHLNTFMDCD 604
+YF +A A+G +A+T+LEK M+ D
Sbjct: 177 SYFSWKASAMGKNVSNAKTFLEKRYTEDMELD 208
>08_02_1495 + 27526008-27526390,27526462-27526876,27529162-27529323
Length = 319
Score = 65.3 bits (152), Expect = 4e-11
Identities = 38/110 (34%), Positives = 56/110 (50%), Gaps = 2/110 (1%)
Frame = +3
Query: 189 GVDSVETRCERIVRISEENYSYDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMP 368
GV+ T + R + S D HI ++ +GL ADAR+L R EC +HR + + P+
Sbjct: 115 GVEKKSTPKLQDSRSMRKIASLDTHIALACAGLKADARVLINRARVECQSHRLTVEDPVT 174
Query: 369 VGRLISSVGNKMQICTQRYDKRPLGVGLLVAGYD--DQGPHIYQTCPSAT 512
V + + Q TQ RP G+ L+ G+D + P +YQT PS T
Sbjct: 175 VEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTEKPALYQTDPSGT 224
Score = 53.6 bits (123), Expect = 1e-07
Identities = 24/52 (46%), Positives = 36/52 (69%)
Frame = +1
Query: 70 QYDSDVTVWSPQGRLHQVEYAMEAVKLGSATIGLKNKDYAVLIALKRAVSEL 225
+YD +TV+SP G L QVEYA+EAV+ G+A +G++ D VL K++ +L
Sbjct: 73 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTVVLGVEKKSTPKL 124
>06_01_0539 + 3869156-3869908
Length = 250
Score = 61.3 bits (142), Expect = 7e-10
Identities = 34/109 (31%), Positives = 56/109 (51%), Gaps = 1/109 (0%)
Frame = +3
Query: 183 LCGVDSVETRCERIVRISEENYSYDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAP 362
L G V ++ + R +E+ Y D H+ +++G+ +DA +L R + S+ P
Sbjct: 45 LVGEKKVTSKLLQTSRSAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEP 104
Query: 363 MPVGRLISSVGNKMQICTQRYDKRPLGVGLLVAGYD-DQGPHIYQTCPS 506
+PV +L+ S+ + Q TQ RP GV L AG+D G +Y + PS
Sbjct: 105 IPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGFQLYMSDPS 153
Score = 54.0 bits (124), Expect = 1e-07
Identities = 24/52 (46%), Positives = 36/52 (69%)
Frame = +1
Query: 70 QYDSDVTVWSPQGRLHQVEYAMEAVKLGSATIGLKNKDYAVLIALKRAVSEL 225
+YDS T++SP+GRL+QVEYAMEA+ + +G+ D VL+ K+ S+L
Sbjct: 4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKL 55
Score = 29.9 bits (64), Expect = 1.9
Identities = 20/56 (35%), Positives = 31/56 (55%)
Frame = +2
Query: 485 YLPDLSVSNYFDCRAMAIGARSQSARTYLEKHLNTFMDCDLQELVAHGLRALRDTL 652
Y+ D S NY +A A+GA SQ+A++ L++ M +E VA L+ L T+
Sbjct: 148 YMSDPS-GNYSGWKAAAVGANSQAAQSMLKQDYRDGM--TREEAVALALKVLSKTM 200
>06_01_0529 + 3831100-3831852
Length = 250
Score = 61.3 bits (142), Expect = 7e-10
Identities = 34/109 (31%), Positives = 56/109 (51%), Gaps = 1/109 (0%)
Frame = +3
Query: 183 LCGVDSVETRCERIVRISEENYSYDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAP 362
L G V ++ + R +E+ Y D H+ +++G+ +DA +L R + S+ P
Sbjct: 45 LVGEKKVTSKLLQTSRSAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEP 104
Query: 363 MPVGRLISSVGNKMQICTQRYDKRPLGVGLLVAGYD-DQGPHIYQTCPS 506
+PV +L+ S+ + Q TQ RP GV L AG+D G +Y + PS
Sbjct: 105 IPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGFQLYMSDPS 153
Score = 54.0 bits (124), Expect = 1e-07
Identities = 24/52 (46%), Positives = 36/52 (69%)
Frame = +1
Query: 70 QYDSDVTVWSPQGRLHQVEYAMEAVKLGSATIGLKNKDYAVLIALKRAVSEL 225
+YDS T++SP+GRL+QVEYAMEA+ + +G+ D VL+ K+ S+L
Sbjct: 4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKL 55
Score = 29.9 bits (64), Expect = 1.9
Identities = 20/56 (35%), Positives = 31/56 (55%)
Frame = +2
Query: 485 YLPDLSVSNYFDCRAMAIGARSQSARTYLEKHLNTFMDCDLQELVAHGLRALRDTL 652
Y+ D S NY +A A+GA SQ+A++ L++ M +E VA L+ L T+
Sbjct: 148 YMSDPS-GNYSGWKAAAVGANSQAAQSMLKQDYRDGM--TREEAVALALKVLSKTM 200
>06_01_0479 + 3419657-3420337
Length = 226
Score = 61.3 bits (142), Expect = 7e-10
Identities = 34/109 (31%), Positives = 56/109 (51%), Gaps = 1/109 (0%)
Frame = +3
Query: 183 LCGVDSVETRCERIVRISEENYSYDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAP 362
L G V ++ + R +E+ Y D H+ +++G+ +DA +L R + S+ P
Sbjct: 21 LVGEKKVTSKLLQTSRSAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEP 80
Query: 363 MPVGRLISSVGNKMQICTQRYDKRPLGVGLLVAGYD-DQGPHIYQTCPS 506
+PV +L+ S+ + Q TQ RP GV L AG+D G +Y + PS
Sbjct: 81 IPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGFQLYMSDPS 129
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/56 (33%), Positives = 31/56 (55%)
Frame = +2
Query: 485 YLPDLSVSNYFDCRAMAIGARSQSARTYLEKHLNTFMDCDLQELVAHGLRALRDTL 652
Y+ D S NY +A A+GA SQ+A++ L++ + +E VA L+ L T+
Sbjct: 124 YMSDPS-GNYSGWKAAAVGANSQAAQSMLKQDYRDGL--TREEAVALALKVLSKTM 176
>09_06_0102 + 20870346-20870518,20870599-20871013,20872180-20872341
Length = 249
Score = 60.9 bits (141), Expect = 9e-10
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Frame = +3
Query: 249 SYDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQICTQRYD 428
S D HI ++ +GL ADAR+L R EC +HR + + + V + + Q TQ
Sbjct: 65 SLDTHIALACAGLKADARVLINRARVECQSHRLTVEDAVTVEYITRYIAGLQQKYTQSGG 124
Query: 429 KRPLGVGLLVAGYD--DQGPHIYQTCPSAT 512
RP G+ L+ G+D P +YQT PS T
Sbjct: 125 VRPFGLSTLIVGFDPYTDKPALYQTDPSGT 154
Score = 54.0 bits (124), Expect = 1e-07
Identities = 24/52 (46%), Positives = 36/52 (69%)
Frame = +1
Query: 70 QYDSDVTVWSPQGRLHQVEYAMEAVKLGSATIGLKNKDYAVLIALKRAVSEL 225
+YD +TV+SP G L QVEYA+EAV+ G+A +G++ D VL K++ +L
Sbjct: 3 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGSDTVVLGVEKKSTPKL 54
>03_01_0568 -
4192514-4192606,4192694-4192753,4192837-4192932,
4193088-4193170,4193289-4193347,4193463-4193559,
4194151-4194232,4194353-4194447,4194585-4194660
Length = 246
Score = 58.0 bits (134), Expect = 6e-09
Identities = 30/73 (41%), Positives = 41/73 (56%)
Frame = +3
Query: 258 EHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQICTQRYDKRP 437
++IG+ +GLTADAR L R E R+ MPV L + +K Q+ TQ RP
Sbjct: 74 KYIGLLATGLTADARSLVYQARNEAAEFRFKWGYEMPVDVLAKWIADKAQVYTQHAYMRP 133
Query: 438 LGVGLLVAGYDDQ 476
LGV +V GYD++
Sbjct: 134 LGVVAMVLGYDEE 146
Score = 51.6 bits (118), Expect = 6e-07
Identities = 23/52 (44%), Positives = 36/52 (69%), Gaps = 1/52 (1%)
Frame = +1
Query: 73 YDSDVTVWSPQGRLHQVEYAMEAVK-LGSATIGLKNKDYAVLIALKRAVSEL 225
YD +T++SP+GRL+QVEYA +AVK G +IG++ KD ++ K+ +L
Sbjct: 9 YDRHITIFSPEGRLYQVEYAFKAVKSAGVTSIGVRGKDSVCVVTQKKVPDKL 60
>01_06_1091 +
34464923-34465026,34465124-34465163,34465245-34465328,
34465457-34465480,34465582-34465655,34465726-34465812,
34465922-34466006,34466215-34466261,34467048-34467113,
34468307-34468397,34468477-34468548
Length = 257
Score = 56.0 bits (129), Expect = 3e-08
Identities = 24/82 (29%), Positives = 44/82 (53%)
Frame = +3
Query: 270 ISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQICTQRYDKRPLGVG 449
++++GL AD R + ++E ++ + P+ V L V + + +CT + RP G G
Sbjct: 84 MAVAGLAADGRQIVSRAKSEAASYEKVYGEPISVKELADRVASYVHLCTLYWWLRPFGCG 143
Query: 450 LLVAGYDDQGPHIYQTCPSATT 515
+++ GYD GP +Y PS +
Sbjct: 144 VILGGYDRDGPQLYMIEPSGVS 165
Score = 45.6 bits (103), Expect = 4e-05
Identities = 23/51 (45%), Positives = 30/51 (58%)
Frame = +1
Query: 73 YDSDVTVWSPQGRLHQVEYAMEAVKLGSATIGLKNKDYAVLIALKRAVSEL 225
YD VT +SP GR+ QVEYA +AV +G+K KD VL K S++
Sbjct: 8 YDLSVTTFSPDGRVFQVEYATKAVDNSGTVVGIKCKDGIVLGVEKLVTSKM 58
>06_01_0387 -
2770387-2770514,2770963-2771063,2771152-2771255,
2771345-2771507,2771550-2771596,2772818-2772946
Length = 223
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +3
Query: 375 RLISSVGNKMQICTQRYDKRPLG--VGLLVAGYDDQGPHIY 491
R IS G + Y R +G +G ++AG+D++GP +Y
Sbjct: 78 RRISIAGASKLLANILYSYRGMGLSIGTMIAGWDEKGPGLY 118
>12_01_1028 + 10541350-10541685,10542140-10542828,10542896-10542998
Length = 375
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -3
Query: 474 GHHNQQPTSPHPRVACHISGYKSAFC 397
GHH +PH +CH +G+ S+ C
Sbjct: 145 GHHQATCPNPHLYYSCHNTGHISSHC 170
>01_05_0154 +
18667338-18670110,18670233-18670561,18670914-18670939,
18671678-18671783
Length = 1077
Score = 27.9 bits (59), Expect = 7.8
Identities = 20/61 (32%), Positives = 27/61 (44%)
Frame = +1
Query: 25 NCTFLN*IKLKMFRNQYDSDVTVWSPQGRLHQVEYAMEAVKLGSATIGLKNKDYAVLIAL 204
N TFL L +F N DV S RLH +E A G +GL N V +++
Sbjct: 100 NLTFLQ--SLDLFNNTLSGDVYFTSQLHRLHYLELAYNDFS-GDLPVGLCNCSNLVFLSV 156
Query: 205 K 207
+
Sbjct: 157 E 157
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,592,716
Number of Sequences: 37544
Number of extensions: 365052
Number of successful extensions: 1032
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1031
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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