Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060237.seq
         (671 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40821| Best HMM Match : No HMM Matches (HMM E-Value=.)              93   2e-19
SB_39285| Best HMM Match : Proteasome (HMM E-Value=0)                  69   5e-12
SB_31216| Best HMM Match : Proteasome (HMM E-Value=2.8e-35)            52   4e-07
SB_47434| Best HMM Match : Proteasome (HMM E-Value=4.3e-17)            46   2e-05
SB_40084| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.013
SB_46004| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.069
SB_48632| Best HMM Match : DUF265 (HMM E-Value=7.6e-22)                29   2.6  
SB_53576| Best HMM Match : SCAN (HMM E-Value=2.3)                      29   4.5  
SB_43519| Best HMM Match : Pre-SET (HMM E-Value=0.37)                  28   7.9  

>SB_40821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 172

 Score = 92.7 bits (220), Expect = 2e-19
 Identities = 40/55 (72%), Positives = 50/55 (90%)
 Frame = +2

Query: 506 SNYFDCRAMAIGARSQSARTYLEKHLNTFMDCDLQELVAHGLRALRDTLPNEVDL 670
           +NYFDC+AMAIGARSQSARTYLEK+L+ F DC+ +EL+ HGL+ALR+TLPNE +L
Sbjct: 13  ANYFDCKAMAIGARSQSARTYLEKYLDAFGDCEPEELIKHGLKALRETLPNEQEL 67



 Score = 31.5 bits (68), Expect = 0.64
 Identities = 11/13 (84%), Positives = 12/13 (92%)
 Frame = +3

Query: 471 DQGPHIYQTCPSA 509
           D GPHI+QTCPSA
Sbjct: 1   DMGPHIFQTCPSA 13


>SB_39285| Best HMM Match : Proteasome (HMM E-Value=0)
          Length = 215

 Score = 68.5 bits (160), Expect = 5e-12
 Identities = 32/87 (36%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
 Frame = +3

Query: 255 DEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQICTQRYDKR 434
           D+H+ ++ +GLTADAR+L    R EC +H+ + + P+ +  +   +    Q  TQ   +R
Sbjct: 68  DDHVLMAFAGLTADARILVNKARVECQSHKLTVEDPVTLEYITRFIATLKQRYTQSNGRR 127

Query: 435 PLGVGLLVAGYDDQG-PHIYQTCPSAT 512
           P G+  L+ G+D  G P +YQT PS T
Sbjct: 128 PFGISTLIVGFDFDGTPRLYQTDPSGT 154



 Score = 54.4 bits (125), Expect = 8e-08
 Identities = 25/51 (49%), Positives = 35/51 (68%)
 Frame = +1

Query: 73  YDSDVTVWSPQGRLHQVEYAMEAVKLGSATIGLKNKDYAVLIALKRAVSEL 225
           YD  +TV+SP G L QVEYA EAVK GS  +G++  +  VL   ++AV++L
Sbjct: 5   YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGNNIVVLGVERKAVAKL 55


>SB_31216| Best HMM Match : Proteasome (HMM E-Value=2.8e-35)
          Length = 224

 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
 Frame = +3

Query: 291 ADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQICTQRYDKRPLGVGLLVAGYD 470
           AD+R   +  R E  N +Y     +PV  L   + +  Q+ TQ  + RPLG G+++ G D
Sbjct: 63  ADSRSQVQRARYEAANWKYKFGYEIPVDMLCKRIADISQVYTQNAEMRPLGCGMILIGID 122

Query: 471 DQ-GPHIYQTCPS 506
           ++ GP +Y+T P+
Sbjct: 123 EEKGPQLYKTDPA 135



 Score = 33.1 bits (72), Expect = 0.21
 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +1

Query: 73  YDSDVTVWSPQGRLHQVEYAMEAVKLGSAT-IGLKNKDYAVLIALKR 210
           +D  +T++SP+GRL+         + G  T +G++  D AV++  K+
Sbjct: 9   FDRHITIFSPEGRLYPSRVCFSGDQPGGLTSVGIRGADSAVVVTQKK 55


>SB_47434| Best HMM Match : Proteasome (HMM E-Value=4.3e-17)
          Length = 308

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 23/71 (32%), Positives = 38/71 (53%)
 Frame = +3

Query: 246 YSYDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQICTQRY 425
           +  D HIG++I+GL AD+R +    R E  N+R  + +P+P+  L++ V   +   T   
Sbjct: 197 FHIDTHIGMAIAGLIADSRQIVATAREEAANYRSVYGSPIPLKYLVNRVSGFIHAFTLYS 256

Query: 426 DKRPLGVGLLV 458
             RP G  + V
Sbjct: 257 AMRPFGCRIYV 267



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 21/55 (38%), Positives = 31/55 (56%)
 Frame = +1

Query: 70  QYDSDVTVWSPQGRLHQVEYAMEAVKLGSATIGLKNKDYAVLIALKRAVSELSAY 234
           +YD   + +SP GR+ QVEYA +AV+     I ++ KD  V    K  +S+L  Y
Sbjct: 136 RYDLSASQFSPDGRVFQVEYANKAVENSGTAIAIRCKDGVVFGVEKLVLSKLYEY 190


>SB_40084| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 67

 Score = 37.1 bits (82), Expect = 0.013
 Identities = 15/25 (60%), Positives = 19/25 (76%)
 Frame = +3

Query: 432 RPLGVGLLVAGYDDQGPHIYQTCPS 506
           RP GV LLVAG+DD  P+++Q  PS
Sbjct: 4   RPFGVSLLVAGWDDDRPYLFQCDPS 28


>SB_46004| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 78

 Score = 34.7 bits (76), Expect = 0.069
 Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
 Frame = +3

Query: 252 YDEHIGI-SISGL---TADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQICTQ 419
           +D HI I S  G     AD+R   +  R E  N +Y     +PV  L   V +  Q+ TQ
Sbjct: 9   FDRHITIFSPEGRLYQVADSRSQVQRARYEAANWKYKFGYEIPVDMLCKRVADISQVYTQ 68

Query: 420 RYDKRPLG 443
             + RPLG
Sbjct: 69  NAEMRPLG 76


>SB_48632| Best HMM Match : DUF265 (HMM E-Value=7.6e-22)
          Length = 455

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/60 (26%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
 Frame = +1

Query: 235 QKKIIPMMNILEFLYQVLLQMLVC*VATCAQSVSITDILMMLQCQ---LDVSSRQLVTKC 405
           Q+  + ++ I+  +  VLL +L   +++ + +VSI D+L+ L C+     ++  +L+T C
Sbjct: 254 QRSDVTLLEIVS-VRDVLLSLLRTGISSASPTVSIRDVLLSLTCRHITCSIALSRLITTC 312


>SB_53576| Best HMM Match : SCAN (HMM E-Value=2.3)
          Length = 334

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/46 (39%), Positives = 25/46 (54%)
 Frame = -1

Query: 305 HTSICSKT*YRNSNMFIIGIIFF*YADNSLTARFNAINTA*SLFFR 168
           HT + + T YRNSN   I I+     D+ LT RF+  +   + FFR
Sbjct: 284 HTLLSTTTKYRNSNEDNIRILTNIIVDSRLTRRFHEFDRR-NYFFR 328


>SB_43519| Best HMM Match : Pre-SET (HMM E-Value=0.37)
          Length = 829

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 368 WHWSIMRISVIETLCAHVATQHTS 297
           W WS+M I+V+  +C    T  TS
Sbjct: 6   WEWSVMTIAVMAVVCHDEVTDPTS 29


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,846,139
Number of Sequences: 59808
Number of extensions: 433695
Number of successful extensions: 1037
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1037
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)