Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060237.seq
         (671 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ416109-1|CAC94781.1|  234|Anopheles gambiae PROSAg25 protein p...    64   3e-12
AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic acetylch...    26   0.94 
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    24   5.0  

>AJ416109-1|CAC94781.1|  234|Anopheles gambiae PROSAg25 protein
           protein.
          Length = 234

 Score = 64.5 bits (150), Expect = 3e-12
 Identities = 31/82 (37%), Positives = 46/82 (56%)
 Frame = +3

Query: 261 HIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQICTQRYDKRPL 440
           HIG+  SG+  D R+L +  R    N+  ++  P+P  +L+  V   MQ  TQ    RP 
Sbjct: 71  HIGMIYSGMGPDYRLLVKQARKLAQNYYLTYREPIPTSQLVQKVATVMQEYTQSGGVRPF 130

Query: 441 GVGLLVAGYDDQGPHIYQTCPS 506
           GV LL+ G+DD  P+++Q  PS
Sbjct: 131 GVSLLICGWDDGRPYLFQCDPS 152



 Score = 39.9 bits (89), Expect = 7e-05
 Identities = 16/39 (41%), Positives = 26/39 (66%)
 Frame = +1

Query: 58  MFRNQYDSDVTVWSPQGRLHQVEYAMEAVKLGSATIGLK 174
           M   +Y   +T +SP G+L Q+EYA+ AV  G+ ++G+K
Sbjct: 1   MASERYSFSLTTFSPSGKLVQIEYALAAVAAGAPSVGIK 39


>AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic
           acetylcholine receptor subunitbeta 1 protein.
          Length = 519

 Score = 26.2 bits (55), Expect = 0.94
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +3

Query: 486 IYQTCPSATTLIVVRWQSEHVRSQRVPI-LRSISIH 590
           I  T     T+I++ W     R+ R+P+ +RS+ +H
Sbjct: 304 IMNTVSILVTVIIINWNFRGPRTHRMPMWIRSVFLH 339


>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 23.8 bits (49), Expect = 5.0
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -3

Query: 414  YKSAFCYQLTR*DVQLALEHHENIGD 337
            YK A  Y L   D  L L H +NIG+
Sbjct: 1102 YKPAPLYILDEVDAALDLSHTQNIGN 1127


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 703,062
Number of Sequences: 2352
Number of extensions: 14731
Number of successful extensions: 22
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 67322955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)