Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060237.seq
         (671 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036694-1|AAB88344.1|  260|Caenorhabditis elegans Proteasome al...   105   4e-23
AC006708-4|AAF60416.2|  250|Caenorhabditis elegans Proteasome al...    66   2e-11
Z79754-8|CAB02097.1|  248|Caenorhabditis elegans Hypothetical pr...    65   5e-11
Z80215-2|CAB02269.1|  253|Caenorhabditis elegans Hypothetical pr...    64   7e-11
Z74030-2|CAA98441.1|  231|Caenorhabditis elegans Hypothetical pr...    50   2e-06
Z81035-5|CAB02738.1|  246|Caenorhabditis elegans Hypothetical pr...    44   7e-05
Z48544-9|CAA88436.2|  250|Caenorhabditis elegans Hypothetical pr...    41   0.001
Z81564-1|CAB04567.1|  284|Caenorhabditis elegans Hypothetical pr...    31   0.75 
AF016446-8|AAC24168.2|  345|Caenorhabditis elegans Seven tm rece...    31   0.99 
Z99709-4|CAB16855.1|  277|Caenorhabditis elegans Hypothetical pr...    30   1.3  
AF016670-7|AAB66102.3|  361|Caenorhabditis elegans Hypothetical ...    29   3.0  
U39645-2|AAA80365.2|  638|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z78542-5|CAB01748.1|  915|Caenorhabditis elegans Hypothetical pr...    27   9.2  
AF040640-1|AAD34652.1|  602|Caenorhabditis elegans Hypothetical ...    27   9.2  

>AF036694-1|AAB88344.1|  260|Caenorhabditis elegans Proteasome alpha
           subunit protein 6 protein.
          Length = 260

 Score =  105 bits (251), Expect = 4e-23
 Identities = 45/63 (71%), Positives = 59/63 (93%)
 Frame = +1

Query: 58  MFRNQYDSDVTVWSPQGRLHQVEYAMEAVKLGSATIGLKNKDYAVLIALKRAVSELSAYQ 237
           MFRNQYD DVTVWSPQGRLHQVEYA+EA+K GSAT+G+K++ +AV++ALKRA ++LS++Q
Sbjct: 1   MFRNQYDGDVTVWSPQGRLHQVEYAVEAMKQGSATVGIKSETHAVIVALKRAQNDLSSHQ 60

Query: 238 KKI 246
           KK+
Sbjct: 61  KKV 63



 Score = 99.1 bits (236), Expect = 2e-21
 Identities = 47/104 (45%), Positives = 68/104 (65%)
 Frame = +3

Query: 246 YSYDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQICTQRY 425
           Y  D H G+SI+GL +D R+L+RY++TEC + R+ +   +P+ +L  S+  K+Q  TQ Y
Sbjct: 64  YEIDTHAGVSIAGLLSDGRILARYLQTECSSWRWDYKQAVPIKKLAESMQLKLQANTQYY 123

Query: 426 DKRPLGVGLLVAGYDDQGPHIYQTCPSATTLIVVRWQSEHVRSQ 557
            +RP GVG+L+AGYD  G HI QT PSA  ++ +   S   RSQ
Sbjct: 124 GRRPFGVGILIAGYDKDGAHIIQTDPSA-EVVSMHGTSIGARSQ 166



 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 26/46 (56%), Positives = 35/46 (76%)
 Frame = +2

Query: 533 AIGARSQSARTYLEKHLNTFMDCDLQELVAHGLRALRDTLPNEVDL 670
           +IGARSQSARTYLE++++ F     ++L+ H L ALRDTLP E +L
Sbjct: 160 SIGARSQSARTYLERNVDNFEKSTPEQLIVHALLALRDTLPAEENL 205


>AC006708-4|AAF60416.2|  250|Caenorhabditis elegans Proteasome alpha
           subunit protein 3 protein.
          Length = 250

 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 34/93 (36%), Positives = 57/93 (61%), Gaps = 1/93 (1%)
 Frame = +3

Query: 231 ISEENYSYDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQI 410
           ++E+ Y   ++I  +++G+TADA +L  ++R    ++R S+   MPV +L+ ++ N+ Q 
Sbjct: 61  MTEKVYRLSDNISCTVAGITADANILINHLRWWAASYRNSYGEEMPVEQLVQNLCNEKQR 120

Query: 411 CTQRYDKRPLGVGLLVAGYDDQ-GPHIYQTCPS 506
            TQ   KRP GV LL  G+D   G  +YQ+ PS
Sbjct: 121 YTQIGGKRPFGVSLLYIGWDKHYGYQLYQSDPS 153



 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 22/52 (42%), Positives = 36/52 (69%)
 Frame = +1

Query: 70  QYDSDVTVWSPQGRLHQVEYAMEAVKLGSATIGLKNKDYAVLIALKRAVSEL 225
           +YDS  T++SP+GRL+QVEYAMEA+      +G+ + +  V+ A ++ V +L
Sbjct: 4   RYDSRTTIFSPEGRLYQVEYAMEAISHAGTCLGILSSEGIVVAAERKNVHKL 55


>Z79754-8|CAB02097.1|  248|Caenorhabditis elegans Hypothetical
           protein F25H2.9 protein.
          Length = 248

 Score = 64.9 bits (151), Expect = 5e-11
 Identities = 30/54 (55%), Positives = 41/54 (75%)
 Frame = +1

Query: 64  RNQYDSDVTVWSPQGRLHQVEYAMEAVKLGSATIGLKNKDYAVLIALKRAVSEL 225
           R++YD  V  +SP+GRL QVEYA+EAVKLGS +IG+K  +  +L A KR+ S+L
Sbjct: 5   RSEYDRGVNTFSPEGRLFQVEYAIEAVKLGSTSIGIKTSEGVLLAAEKRSTSKL 58



 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
 Frame = +3

Query: 255 DEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGN-KMQI---CTQR 422
           D+HIG++ +GL AD+R L    + E  N  ++++  + V  +  SV N  +Q      + 
Sbjct: 71  DQHIGVTFAGLIADSRTLVERAQIEAQNFWFTYNRKIRVEDVTQSVANLALQFGDDDVKA 130

Query: 423 YDKRPLGVGLLVAGYDDQGPHIYQTCPSAT 512
              RP GV +L AG D +G  ++   PS T
Sbjct: 131 SMSRPFGVAMLFAGVDQEGAKLFHLDPSGT 160


>Z80215-2|CAB02269.1|  253|Caenorhabditis elegans Hypothetical
           protein C36B1.4 protein.
          Length = 253

 Score = 64.5 bits (150), Expect = 7e-11
 Identities = 29/85 (34%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
 Frame = +3

Query: 255 DEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQICTQRYDKR 434
           D+H+ ++ +GL+ADAR+L    R EC +++ + + P+ V  +   + N  Q  TQ   +R
Sbjct: 67  DDHVMLAFAGLSADARVLVDRARIECQSYKLTLEDPVTVAYISRYIANTKQRFTQSPGRR 126

Query: 435 PLGVGLLVAGYDDQG-PHIYQTCPS 506
           P G+ +L+ G+D  G P +++T PS
Sbjct: 127 PFGISMLIGGFDHDGTPRLFKTEPS 151



 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 25/53 (47%), Positives = 36/53 (67%)
 Frame = +1

Query: 67  NQYDSDVTVWSPQGRLHQVEYAMEAVKLGSATIGLKNKDYAVLIALKRAVSEL 225
           N+YD  +T++SP G L QVEYA EAVK GS  +G++ KD  V+   K+++  L
Sbjct: 2   NRYDRAITIFSPDGHLFQVEYAQEAVKKGSTAVGVRGKDCIVIGVEKKSIPAL 54


>Z74030-2|CAA98441.1|  231|Caenorhabditis elegans Hypothetical
           protein D1054.2 protein.
          Length = 231

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
 Frame = +3

Query: 258 EHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQICTQRYDKRP 437
           +HIG   SG+  D R+L +  R   + +   +   MP  +L++ +   MQ  TQ    RP
Sbjct: 66  KHIGCVYSGMGPDFRILVKKARKIAMEYEMMYGEEMPTIQLVTDIAAVMQEYTQSGGVRP 125

Query: 438 LGVGLLVAGYDDQ--GPHIYQTCPS 506
            G  LL+AG+D     P ++Q  PS
Sbjct: 126 FGASLLIAGWDKNPGRPLLFQCDPS 150



 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 24/60 (40%), Positives = 38/60 (63%)
 Frame = +1

Query: 67  NQYDSDVTVWSPQGRLHQVEYAMEAVKLGSATIGLKNKDYAVLIALKRAVSELSAYQKKI 246
           + Y   +T +SP G+L Q+EYA+ AVK G  ++GL+ KD  V++A +   S L+  Q K+
Sbjct: 3   DHYGFSLTTFSPSGKLMQIEYALNAVKNGQPSVGLRAKD-GVVLATENVGSVLTDDQPKV 61



 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 512 YFDCRAMAIGARSQSARTYLEKHLNTFMDCD 604
           YF  +A A+G    +A+T+LEK  +  ++ D
Sbjct: 153 YFAWKATALGKNDVNAKTFLEKRFSEALELD 183


>Z81035-5|CAB02738.1|  246|Caenorhabditis elegans Hypothetical
           protein C15H11.7 protein.
          Length = 246

 Score = 44.4 bits (100), Expect = 7e-05
 Identities = 20/52 (38%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
 Frame = +1

Query: 73  YDSDVTVWSPQGRLHQVEYAMEAVKLGSAT-IGLKNKDYAVLIALKRAVSEL 225
           +D  +T++SP+GR++QVEYA +A+   + T + +K  D AV+   KR    L
Sbjct: 9   FDRHITIFSPEGRVYQVEYAFKAINSTNLTAVAVKGADAAVIAVQKRVPDSL 60


>Z48544-9|CAA88436.2|  250|Caenorhabditis elegans Hypothetical
           protein ZK945.2 protein.
          Length = 250

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 20/51 (39%), Positives = 30/51 (58%)
 Frame = +1

Query: 73  YDSDVTVWSPQGRLHQVEYAMEAVKLGSATIGLKNKDYAVLIALKRAVSEL 225
           YD   + +SP GR+ QVEYA +AV      I ++ K+  V++A K   S+L
Sbjct: 8   YDLAASTFSPDGRIFQVEYAQKAVDNAGTMIAIRGKNGVVVVADKLISSKL 58



 Score = 37.9 bits (84), Expect = 0.006
 Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 1/97 (1%)
 Frame = +3

Query: 246 YSYDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQICTQRY 425
           ++ ++++G++++G   D   L  Y   E +     +  PMP+  + +SV   + I T   
Sbjct: 68  FNVNDNVGVAVAGNYPDGFALKNYAYGEAMKWLKDYREPMPIQNIANSVAEYIHIHTLGI 127

Query: 426 DKRPLGVGLLVAGYDDQ-GPHIYQTCPSATTLIVVRW 533
             RP G G     ++ Q G  ++   PS        W
Sbjct: 128 -SRPFGAGAFFMSWNKQTGGRLFLVEPSGLNYEYKAW 163


>Z81564-1|CAB04567.1|  284|Caenorhabditis elegans Hypothetical
           protein K05C4.1 protein.
          Length = 284

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 19/74 (25%), Positives = 33/74 (44%)
 Frame = +3

Query: 273 SISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQICTQRYDKRPLGVGL 452
           +++G  AD +  +R +   C  +       + V        N +      Y  + L VG 
Sbjct: 115 TMAGGAADCQFWTRIVAKYCTLYELREKTSITVSAASKYFANTLY----GYRGQGLSVGS 170

Query: 453 LVAGYDDQGPHIYQ 494
           +VAGYD +GP I++
Sbjct: 171 MVAGYDKKGPQIFK 184


>AF016446-8|AAC24168.2|  345|Caenorhabditis elegans Seven tm
           receptor protein 205 protein.
          Length = 345

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 18/49 (36%), Positives = 30/49 (61%)
 Frame = +1

Query: 142 VKLGSATIGLKNKDYAVLIALKRAVSELSAYQKKIIPMMNILEFLYQVL 288
           V+ GSA I L      VL+ ++++  EL AY K ++  ++ILE LY ++
Sbjct: 12  VQKGSAIIALILNTCLVLLIIRKSPKELGAY-KFLMIYISILEVLYAIV 59


>Z99709-4|CAB16855.1|  277|Caenorhabditis elegans Hypothetical
           protein C47B2.4 protein.
          Length = 277

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 438 LGVGLLVAGYDDQGPHIYQTCPSATTL 518
           +G  LL+ G D  GPH+Y    + TT+
Sbjct: 140 IGAYLLIGGVDPTGPHLYMCSANGTTM 166


>AF016670-7|AAB66102.3|  361|Caenorhabditis elegans Hypothetical
           protein K02F6.2 protein.
          Length = 361

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +3

Query: 468 DDQGPHIYQTCPSATTLIVVRWQSEHVRSQRVPILRSISIH 590
           DD    + + C ++T+    R    HV+  R+P L  + +H
Sbjct: 161 DDYKFQVEEVCMNSTSFKTCRQIHRHVQESRIPYLTGVKVH 201


>U39645-2|AAA80365.2|  638|Caenorhabditis elegans Hypothetical
           protein C14F11.2 protein.
          Length = 638

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -2

Query: 202 TLSTPHSPYSSDQWLQNQVSQLPLHTPLDGDGLED 98
           T+++ H+   + Q +QN++S +P H P    G E+
Sbjct: 345 TITSVHAKSHNVQIVQNKISSVPSHLPTSNGGKEN 379


>Z78542-5|CAB01748.1|  915|Caenorhabditis elegans Hypothetical
           protein F20D1.6 protein.
          Length = 915

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 246 YSYDEHIGISISGLTADARMLSRY 317
           Y + EH+G SIS    + RM SR+
Sbjct: 215 YLFKEHLGASISAFHEEVRMSSRF 238


>AF040640-1|AAD34652.1|  602|Caenorhabditis elegans Hypothetical
           protein F09D1.1 protein.
          Length = 602

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 202 TLSTPHSPYSSDQWLQNQVSQLPLHTPLD 116
           TL  P +P   D  LQN + Q+PL T L+
Sbjct: 422 TLDLPSAPLYRDVQLQNIIPQVPLSTLLE 450


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,390,839
Number of Sequences: 27780
Number of extensions: 328590
Number of successful extensions: 914
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)