Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060237.seq
         (671 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    23   2.0  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   4.6  
DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2 pr...    22   6.1  
DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    22   6.1  
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    22   6.1  
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    22   6.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   8.1  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = +2

Query: 473 PRTSYLPDLSVSNYFDCRAM--AIGARSQSARTYLEKHLNTFMDCDLQELVAHGLRALRD 646
           P   Y PDL+ S+YF  R++  ++  ++ +    ++ +L  F     Q+    G+  L +
Sbjct: 268 PHPPYSPDLAPSDYFLFRSLQNSLNGKNFNNDDDIKSYLIQFFANKNQKFYERGIMMLPE 327

Query: 647 TLPNEVD 667
                +D
Sbjct: 328 RWQKVID 334


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +3

Query: 486 IYQTCPSATTLIVVRWQSEHVRSQRVP-ILRSI 581
           I  T     T+I++ W     R+ R+P ++R I
Sbjct: 305 IMNTVSILVTVIIINWNFRGPRTHRMPQLIRKI 337


>DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2
           precursor protein.
          Length = 175

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -1

Query: 383 DETSNWHWSIM 351
           DE SNW+W+ +
Sbjct: 21  DEGSNWNWNTL 31


>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -1

Query: 383 DETSNWHWSIM 351
           DE SNW+W+ +
Sbjct: 65  DEGSNWNWNTL 75


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -1

Query: 383 DETSNWHWSIM 351
           DE SNW+W+ +
Sbjct: 65  DEGSNWNWNTL 75


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.
          Length = 223

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -1

Query: 383 DETSNWHWSIM 351
           DE SNW+W+ +
Sbjct: 65  DEGSNWNWNTL 75


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +1

Query: 109  RLHQVEYAMEAVKLGSATIGLKNKDYAVLIAL 204
            ++ + E   E  K+G   IGL +  + V +AL
Sbjct: 1546 KVEENEIIFEIYKMGDRFIGLTSDKFDVSLAL 1577


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,417
Number of Sequences: 438
Number of extensions: 3799
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)