Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060236.seq
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|...    27   1.8  
SPBC577.03c |||GCN5-related N-acetyltransferase |Schizosaccharom...    27   3.1  
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces...    27   3.1  
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    26   4.1  
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr...    26   5.5  
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    25   9.5  
SPAC1834.01 |sup45||translation release factor eRF1|Schizosaccha...    25   9.5  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    25   9.5  

>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 834

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = +3

Query: 297 TYHDLGLNYSSFQPFFGYVDMRALLENFCVYHVNAPGQEEGAPSLPEDYMYPSMDE 464
           T   LG+N+   +P   Y D+R  +E  C   +    + E   + P DY++  +D+
Sbjct: 455 TLTSLGINFVMKKPPVLYADIRGSVEELC---ITLYKKAEQVGNAPPDYLFFILDK 507


>SPBC577.03c |||GCN5-related N-acetyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +3

Query: 270 GDRNKPAIITYHDLGLNYSSFQPFFGYVDMRAL 368
           G +NKP+I  +  LG +   +  +F +V++  +
Sbjct: 181 GSQNKPSIRLFKKLGFSQVKYNAYFDHVELELM 213


>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 796

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -1

Query: 308 VMIGYDGGLVTVSLHSDEMS 249
           V +G+D GL+T SL  DE S
Sbjct: 285 VTVGFDNGLITFSLGRDEPS 304


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
           protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +3

Query: 423 PSLPEDYMYPSMDELANQL 479
           PSLPED ++P +++L N L
Sbjct: 132 PSLPEDPIFPLLNQLCNFL 150


>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 808

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +3

Query: 480 NYVMGHFRASDFIRIPRGRWSER 548
           +++MG    +DF+++P G W+ R
Sbjct: 111 DFLMGIKLETDFVKLPEGNWALR 133


>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -3

Query: 486 RSSVDSPTRPSMDTYSLPASSGRLPLGLER*HGTRKSFRAEPS 358
           R+S++SPTR + D Y   A +  L +   R      S+  EPS
Sbjct: 492 RTSIESPTRTADDLYKEFARAPFLQIVSHRSQPQAFSYHFEPS 534


>SPAC1834.01 |sup45||translation release factor
           eRF1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 433

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +1

Query: 502 GHQTL*GFRVGAGANVLAXIALXXPKK 582
           GHQTL G   G+   VL    +  PKK
Sbjct: 150 GHQTLYGVVSGSAREVLQRFTVDLPKK 176


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = -1

Query: 278 TVSLHSDEMSPRSVRTRTSVQAASPLNRRALGNCSWMLRSSMSSILPETVSISK 117
           TVS+H D   P  +++R + Q +  +   A  + S    SS +   P  ++ SK
Sbjct: 503 TVSIHMDGRQPSPIKSRNNNQMSFAMEEEA--DVSQPSSSSFTLSFPSALTSSK 554


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,749,906
Number of Sequences: 5004
Number of extensions: 57143
Number of successful extensions: 165
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)