Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060236.seq
(653 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_02_0031 - 5832475-5832696,5832789-5833064,5833303-5833380,583... 76 3e-14
01_01_0653 - 4981517-4981738,4981841-4981976,4982066-4982121,498... 73 2e-13
02_02_0121 + 7005356-7005418,7007533-7007632,7007713-7007810,700... 72 5e-13
06_03_0479 - 21289903-21290124,21290207-21290342,21290435-212904... 70 1e-12
01_01_0733 - 5715719-5715785,5715908-5715966,5717844-5717884,571... 29 3.2
07_01_0115 + 851505-852368,852611-852730,853000-853020,853253-85... 29 4.3
02_05_0444 - 29073740-29073844,29074417-29074725,29077910-290779... 29 4.3
12_02_0106 + 13654686-13655789 28 7.5
11_06_0594 + 25349612-25352530 28 7.5
03_02_0898 - 12246747-12246833,12247425-12247601,12248054-122481... 28 7.5
01_01_0422 - 3188406-3189254 28 7.5
09_06_0362 + 22545891-22546541 27 9.9
>05_02_0031 -
5832475-5832696,5832789-5833064,5833303-5833380,
5833464-5833550,5833639-5833699,5833792-5833880,
5834001-5834098,5834197-5834296,5834876-5834953
Length = 362
Score = 75.8 bits (178), Expect = 3e-14
Identities = 37/83 (44%), Positives = 54/83 (65%), Gaps = 2/83 (2%)
Frame = +3
Query: 258 VAVQGDRNKPAIITYHDLGLNYSS-FQPFFGYVDMRALL-ENFCVYHVNAPGQEEGAPSL 431
VA+ GD +KPA+ITY D+ LN+ S FQ ++ +LL NFC+YH+N G E GA +
Sbjct: 39 VAIYGDEDKPALITYPDIALNHMSCFQGLLFCPEVASLLLHNFCIYHINPQGHELGAAPI 98
Query: 432 PEDYMYPSMDELANQLNYVMGHF 500
P D PS+++LA+Q+ V+ F
Sbjct: 99 PSDVPVPSVEDLADQVADVLDFF 121
>01_01_0653 -
4981517-4981738,4981841-4981976,4982066-4982121,
4982228-4982284,4982373-4982450,4982533-4982619,
4982707-4982767,4982862-4982950,4983048-4983145,
4983242-4983341,4983983-4984042
Length = 347
Score = 72.9 bits (171), Expect = 2e-13
Identities = 38/83 (45%), Positives = 51/83 (61%), Gaps = 2/83 (2%)
Frame = +3
Query: 258 VAVQGDRNKPAIITYHDLGLNYSS-FQPFFGYVDMRALL-ENFCVYHVNAPGQEEGAPSL 431
V+V GD +KPA+ITY D+ LNY S FQ F + +LL NFC+YH+ G E GA +
Sbjct: 33 VSVFGDEDKPALITYPDVALNYMSCFQGLFFCPEAASLLLHNFCIYHITPQGHELGAAPI 92
Query: 432 PEDYMYPSMDELANQLNYVMGHF 500
D PS+DEL +Q+ V+ F
Sbjct: 93 SSDVPVPSVDELVDQVADVLDFF 115
>02_02_0121 +
7005356-7005418,7007533-7007632,7007713-7007810,
7007933-7008021,7008111-7008171,7008253-7008339,
7008409-7008486,7008583-7008639,7008731-7008786,
7008877-7009012,7009103-7009324
Length = 348
Score = 71.7 bits (168), Expect = 5e-13
Identities = 36/83 (43%), Positives = 53/83 (63%), Gaps = 2/83 (2%)
Frame = +3
Query: 258 VAVQGDRNKPAIITYHDLGLNYSS-FQPFFGYVDMRALL-ENFCVYHVNAPGQEEGAPSL 431
VAV GD +KPA++TY D+ LN+ S FQ + +LL NFC+YH++ PG E GA +
Sbjct: 34 VAVYGDHDKPALVTYPDIALNHMSCFQGLLFCPEAASLLLHNFCIYHISPPGHELGAAPI 93
Query: 432 PEDYMYPSMDELANQLNYVMGHF 500
+ PS+D+LA+Q+ V+ F
Sbjct: 94 SPNAPIPSVDDLADQVADVLDFF 116
>06_03_0479 -
21289903-21290124,21290207-21290342,21290435-21290490,
21290734-21290811,21290902-21290988,21291067-21291127,
21291220-21291308,21291448-21291545,21291655-21291754,
21293968-21294030
Length = 329
Score = 70.1 bits (164), Expect = 1e-12
Identities = 36/83 (43%), Positives = 52/83 (62%), Gaps = 2/83 (2%)
Frame = +3
Query: 258 VAVQGDRNKPAIITYHDLGLNYSS-FQPFFGYVDMRALL-ENFCVYHVNAPGQEEGAPSL 431
VAV GD +KPA++TY D+ LN+ S FQ + +LL NFC+YH++ PG E GA +
Sbjct: 34 VAVYGDHDKPALVTYPDIALNHMSCFQGLLFCPEASSLLLHNFCIYHISPPGHELGAAPV 93
Query: 432 PEDYMYPSMDELANQLNYVMGHF 500
S+DELA+Q++ V+ F
Sbjct: 94 SPSSPVASVDELADQVSDVLDFF 116
>01_01_0733 -
5715719-5715785,5715908-5715966,5717844-5717884,
5718086-5718134,5718427-5718559,5719303-5719384,
5719990-5720472,5720612-5721024,5721260-5721419,
5721541-5721665,5721756-5721811,5721831-5721889,
5722069-5722180,5722952-5723032
Length = 639
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 95 LEYFKWYTLRWKLFQAVWTTSNFA-TSNCSSRVLAGLVEK 211
L+ F W T+ +L W + NF+ +SN S R+L V K
Sbjct: 72 LDLFAWQTVFQQLISYKWLSRNFSVSSNDSKRLLQEFVNK 111
>07_01_0115 +
851505-852368,852611-852730,853000-853020,853253-853369,
853466-853555,853730-853837,853897-853932,853933-854022
Length = 481
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/40 (45%), Positives = 24/40 (60%)
Frame = -1
Query: 299 GYDGGLVTVSLHSDEMSPRSVRTRTSVQAASPLNRRALGN 180
G+ GG+ T S+ DEM+PR R SV +PL R AL +
Sbjct: 71 GFRGGVATRSVAFDEMTPR----RASVDVPNPL-RAALSS 105
>02_05_0444 -
29073740-29073844,29074417-29074725,29077910-29077981,
29078541-29078633,29078825-29078982,29079247-29079415,
29080204-29081241,29081632-29081759,29081926-29081985,
29082033-29083077
Length = 1058
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = -1
Query: 254 MSPRSVRTRTSVQAASPLNRRALGNC--SWMLRSSMSSILPETVS 126
M S+R T Q PL R+ LG C W LR M S+ + S
Sbjct: 103 MEEASIRVGTLYQNGDPLGRKELGRCVVEW-LRQGMQSMASKFAS 146
>12_02_0106 + 13654686-13655789
Length = 367
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +2
Query: 323 LVISTVLRIRRYEGSARKLLRVPCQRSRPRGRRPELAGRLYVSIDGRVGESTELR 487
++ + +IRR R++ +P + P GRRPEL+ Y + G + S E R
Sbjct: 300 MIPKILTKIRRRRSRLRQMFALPGRGGGP-GRRPELSKAGYQVLSGLLRCSPEKR 353
>11_06_0594 + 25349612-25352530
Length = 972
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -3
Query: 630 QSGLVRCAVDHGQRIYLLGXXKSDXSKHVRSSAHAESL*SLMPES 496
QSG+ A DH Q+ +L G ++D +H+R AE L E+
Sbjct: 154 QSGM---ASDHSQQAFLTGDSEADQQEHLRRRILAEDDSGLFKEA 195
>03_02_0898 -
12246747-12246833,12247425-12247601,12248054-12248176,
12248545-12248766,12249556-12249606,12249712-12249987
Length = 311
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +3
Query: 375 NFCVYHVNAPGQEEGAPSLPEDYMYPSMDELANQLN 482
+F + +NA +++G P+L +YP ++E N LN
Sbjct: 161 DFLLMALNARREKKGLPALEPLQVYPIIEEKVNALN 196
>01_01_0422 - 3188406-3189254
Length = 282
Score = 27.9 bits (59), Expect = 7.5
Identities = 20/85 (23%), Positives = 33/85 (38%)
Frame = -1
Query: 455 RWIHIVFRQARGAFLLAWSVDMVHAKVFEQSPHIDVSEERLK*RVVEAEVMIGYDGGLVT 276
RW H+V R LA D ++ + F S E L ++ +G+ G
Sbjct: 56 RWFHVVLRTQTSELTLATRADNLYLEGFRGSDGTSAWWE-LTRGLIAGATYLGFGGSYRE 114
Query: 275 VSLHSDEMSPRSVRTRTSVQAASPL 201
+ H+D M ++ + QA L
Sbjct: 115 LLGHTDNMVGVTLGPQQMTQAVDTL 139
>09_06_0362 + 22545891-22546541
Length = 216
Score = 27.5 bits (58), Expect = 9.9
Identities = 8/27 (29%), Positives = 17/27 (62%)
Frame = +3
Query: 243 PRRHLVAVQGDRNKPAIITYHDLGLNY 323
P +H++ +Q + +P ++ DLG +Y
Sbjct: 158 PTKHMLLMQQQQQEPTVVELEDLGADY 184
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,934,608
Number of Sequences: 37544
Number of extensions: 419548
Number of successful extensions: 1157
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1153
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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