Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060236.seq
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22347| Best HMM Match : No HMM Matches (HMM E-Value=.)              95   6e-20
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)               49   3e-06
SB_37595| Best HMM Match : Ribosomal_S11 (HMM E-Value=0)               29   3.3  
SB_39941| Best HMM Match : PseudoU_synth_2 (HMM E-Value=1.1e-12)       29   4.4  
SB_36779| Best HMM Match : PseudoU_synth_2 (HMM E-Value=6.3e-14)       29   4.4  
SB_59669| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_21612| Best HMM Match : Orthoreo_P17 (HMM E-Value=6.9)              28   5.8  
SB_57482| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             28   7.6  
SB_27543| Best HMM Match : Flag1_repress (HMM E-Value=4.4)             28   7.6  
SB_26629| Best HMM Match : Albicidin_res (HMM E-Value=2.9)             28   7.6  
SB_16796| Best HMM Match : Multi_Drug_Res (HMM E-Value=0.96)           28   7.6  
SB_1649| Best HMM Match : ANF_receptor (HMM E-Value=1.2e-05)           28   7.6  

>SB_22347| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 327

 Score = 94.7 bits (225), Expect = 6e-20
 Identities = 39/73 (53%), Positives = 58/73 (79%), Gaps = 1/73 (1%)
 Frame = +3

Query: 258 VAVQGDRNKPAIITYHDLGLNYSS-FQPFFGYVDMRALLENFCVYHVNAPGQEEGAPSLP 434
           V++QG   KPAI+T+HD+G N++S F  FF +VD++ LLE+FC+YH++APGQE     LP
Sbjct: 51  VSMQGTEGKPAIVTFHDIGQNHTSAFLGFFNFVDVQPLLEHFCIYHIDAPGQENCEKQLP 110

Query: 435 EDYMYPSMDELAN 473
           E ++YP+M+ELA+
Sbjct: 111 ETFVYPTMEELAD 123


>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1309

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 18/46 (39%), Positives = 34/46 (73%), Gaps = 1/46 (2%)
 Frame = +3

Query: 276 RNKPAIITYHDLGLNYSS-FQPFFGYVDMRALLENFCVYHVNAPGQ 410
           + K  +IT+HDLG+N+ + F+ F  + D++++ + F +YH++APGQ
Sbjct: 811 KKKDVMITFHDLGMNHKTCFEKFLMHEDIKSIKDRFVIYHLDAPGQ 856


>SB_37595| Best HMM Match : Ribosomal_S11 (HMM E-Value=0)
          Length = 543

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 7/58 (12%)
 Frame = +2

Query: 104 FKWYTL-------RWKLFQAVWTTSNFATSNCSSRVLAGLVEKPLVLRCGCALTAATS 256
           +KWYT         W+  Q +W T N +  +     L     KP+ +R  C L +  S
Sbjct: 23  WKWYTFGTITQISSWRCAQILWLTGNVSVMHAPVAALTAKRRKPMGMRETCYLLSKVS 80


>SB_39941| Best HMM Match : PseudoU_synth_2 (HMM E-Value=1.1e-12)
          Length = 266

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/61 (27%), Positives = 27/61 (44%)
 Frame = +3

Query: 261 AVQGDRNKPAIITYHDLGLNYSSFQPFFGYVDMRALLENFCVYHVNAPGQEEGAPSLPED 440
           A++  +NKP +   H L  N ++ Q        R + + +    V  P  EEG  S+P  
Sbjct: 18  AIKNYQNKPELA--HRLDKNKTAAQKIAEMFQSRMVKKRYLAVSVGVPRYEEGTISIPVG 75

Query: 441 Y 443
           Y
Sbjct: 76  Y 76


>SB_36779| Best HMM Match : PseudoU_synth_2 (HMM E-Value=6.3e-14)
          Length = 223

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/61 (27%), Positives = 27/61 (44%)
 Frame = +3

Query: 261 AVQGDRNKPAIITYHDLGLNYSSFQPFFGYVDMRALLENFCVYHVNAPGQEEGAPSLPED 440
           A++  +NKP +   H L  N ++ Q        R + + +    V  P  EEG  S+P  
Sbjct: 79  AIKNYQNKPELA--HRLDKNKTAAQKIAEMFQSRMVKKRYLAVSVGVPRYEEGTISIPVG 136

Query: 441 Y 443
           Y
Sbjct: 137 Y 137


>SB_59669| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3511

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -3

Query: 270  LAQRRDVAAVSAHPHLSTSGFSTKPASTRELQLDVAKFDVVHT 142
            LAQ R +  V+ +P+ S SGF  KP + RE  +     D   T
Sbjct: 2678 LAQVRQLG-VACNPNFSFSGFLAKPTTVREWNIQGLPSDAFST 2719


>SB_21612| Best HMM Match : Orthoreo_P17 (HMM E-Value=6.9)
          Length = 387

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 7/30 (23%), Positives = 18/30 (60%)
 Frame = +1

Query: 382 ACTMSTLQAKRKAPRACRKTICIHRWTSWR 471
           +CT++ ++   ++PR   + +  H+W  W+
Sbjct: 141 SCTINEVEDDSRSPRTSGRELVYHQWKGWK 170


>SB_57482| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 789

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 132 CFRQYGRHRTSQHPTAVPECSP 197
           C +Q  R RTS   T VP+C P
Sbjct: 723 CLQQQSRARTSAMDTFVPDCEP 744


>SB_27543| Best HMM Match : Flag1_repress (HMM E-Value=4.4)
          Length = 371

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +2

Query: 359 EGSARKLLRVPCQRSRPRGRRPELAGRLYVSIDGRVGES 475
           E   R++L     R+ PRGRR  L GR+ V+ +G++  S
Sbjct: 131 EAKVREVLIRFTNRAIPRGRRIWLCGRVIVTHEGKLYRS 169


>SB_26629| Best HMM Match : Albicidin_res (HMM E-Value=2.9)
          Length = 245

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/60 (25%), Positives = 30/60 (50%)
 Frame = +3

Query: 450 PSMDELANQLNYVMGHFRASDFIRIPRGRWSERAC*XRSYXXQEGRCADHDQLHIXPGRI 629
           PS D++   +  ++ H++ S  + +   RWSE+A    S    +   AD + +   PG++
Sbjct: 152 PSCDDVLKAIADIVKHYKWSSLLVLSDVRWSEQARRLHSLLPSDIEKADVNIVLDYPGKL 211


>SB_16796| Best HMM Match : Multi_Drug_Res (HMM E-Value=0.96)
          Length = 725

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +3

Query: 426 SLP--EDYMYPSMDELANQLNYVMGHFRASDFIRIPRGRWSER 548
           SLP  +DY+   + ++   +N +     ASDF+ I R R  ER
Sbjct: 321 SLPGTQDYLTKKLTDIREVVNVLKAETNASDFVIIERSRPIER 363


>SB_1649| Best HMM Match : ANF_receptor (HMM E-Value=1.2e-05)
          Length = 481

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/60 (25%), Positives = 30/60 (50%)
 Frame = +3

Query: 450 PSMDELANQLNYVMGHFRASDFIRIPRGRWSERAC*XRSYXXQEGRCADHDQLHIXPGRI 629
           PS D++   +  ++ H++ S  + +   RWSE+A    S    +   AD + +   PG++
Sbjct: 152 PSCDDVLKAIADIVKHYKWSSLLVLSDVRWSEQARRLHSLLPSDIEKADVNIVLDYPGKL 211


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,376,596
Number of Sequences: 59808
Number of extensions: 455720
Number of successful extensions: 1258
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1256
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)