Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060236.seq
         (653 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g56750.1 68418.m07083 Ndr family protein similar to SP|O23969...    73   2e-13
At2g19620.1 68415.m02292 Ndr family protein similar to SP|O23969...    72   4e-13
At5g11790.1 68418.m01376 Ndr family protein similar to SP|O23969...    69   4e-12
At4g38050.1 68417.m05374 xanthine/uracil permease family protein...    29   2.7  
At1g03090.2 68414.m00284 methylcrotonyl-CoA carboxylase alpha ch...    29   3.6  
At4g13240.1 68417.m02059 hypothetical protein contains Pfam prof...    27   8.2  
At2g46400.1 68415.m05775 WRKY family transcription factor              27   8.2  

>At5g56750.1 68418.m07083 Ndr family protein similar to SP|O23969
           Pollen specific protein SF21 {Helianthus annuus};
           contains Pfam profile PF03096: Ndr family
          Length = 346

 Score = 72.5 bits (170), Expect = 2e-13
 Identities = 41/84 (48%), Positives = 53/84 (63%), Gaps = 3/84 (3%)
 Frame = +3

Query: 258 VAVQGDRNKPAIITYHDLGLNYSS-FQPFFGYVDMRALL-ENFCVYHVNAPGQEEG-APS 428
           V V GDR KPA+ITY DL LN+ S FQ  F   +  +LL  NFC+YH++ PG E G AP 
Sbjct: 33  VIVYGDREKPALITYPDLALNHMSCFQGLFFCPEAASLLLHNFCIYHISPPGHELGAAPI 92

Query: 429 LPEDYMYPSMDELANQLNYVMGHF 500
            P D + PS + LA+Q+  V+  F
Sbjct: 93  CPNDSV-PSAENLADQILEVLNFF 115


>At2g19620.1 68415.m02292 Ndr family protein similar to SP|O23969
           Pollen specific protein SF21 {Helianthus annuus};
           contains Pfam profile PF03096: Ndr family
          Length = 347

 Score = 71.7 bits (168), Expect = 4e-13
 Identities = 37/83 (44%), Positives = 53/83 (63%), Gaps = 2/83 (2%)
 Frame = +3

Query: 258 VAVQGDRNKPAIITYHDLGLNYSS-FQPFFGYVD-MRALLENFCVYHVNAPGQEEGAPSL 431
           V V GD+ KPA+ITY D+ LNY S FQ  F   + +  LL NFC+YH++ PG E GA  +
Sbjct: 33  VVVYGDQEKPALITYPDVALNYMSCFQGLFLCPEAVSLLLHNFCIYHISPPGHEFGAAPV 92

Query: 432 PEDYMYPSMDELANQLNYVMGHF 500
             +   PS+++LA+Q+  V+  F
Sbjct: 93  CSNDPSPSVEDLADQILEVLNFF 115


>At5g11790.1 68418.m01376 Ndr family protein similar to SP|O23969
           Pollen specific protein SF21 {Helianthus annuus};
           contains Pfam profile PF03096: Ndr family
          Length = 344

 Score = 68.5 bits (160), Expect = 4e-12
 Identities = 37/83 (44%), Positives = 51/83 (61%), Gaps = 2/83 (2%)
 Frame = +3

Query: 258 VAVQGDRNKPAIITYHDLGLNYS-SFQPFFGYVDMRALL-ENFCVYHVNAPGQEEGAPSL 431
           VAV GD +KPA+ITY D+ LNY   FQ      +  +LL  NFC+YH++  G E GAP +
Sbjct: 33  VAVCGDPDKPALITYPDIALNYMFCFQGLLFCPEASSLLLHNFCIYHISPLGHELGAPMI 92

Query: 432 PEDYMYPSMDELANQLNYVMGHF 500
             D    S D+LA+Q+  V+ +F
Sbjct: 93  SVDAPLLSADDLADQIVEVLNYF 115


>At4g38050.1 68417.m05374 xanthine/uracil permease family protein
           contains Pfam profile: PF00860 permease family
          Length = 703

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/66 (25%), Positives = 31/66 (46%)
 Frame = +3

Query: 297 TYHDLGLNYSSFQPFFGYVDMRALLENFCVYHVNAPGQEEGAPSLPEDYMYPSMDELANQ 476
           TYH   +  ++ +P  G V     LE FC       G   G+ +L E+    ++ ++A++
Sbjct: 464 TYHSASMIVNAKRPTRGIVSRGIALEGFCSLLAGIWGSGTGSTTLTENIHTINITKVASR 523

Query: 477 LNYVMG 494
              V+G
Sbjct: 524 RALVIG 529


>At1g03090.2 68414.m00284 methylcrotonyl-CoA carboxylase alpha
           chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase
           1 (MCCA) nearly identical to SP|Q42523
           Methylcrotonyl-CoA carboxylase alpha chain,
           mitochondrial precursor (EC 6.4.1.4)
           (3-Methylcrotonyl-CoA carboxylase 1) (MCCase alpha
           subunit) (3-methylcrotonyl-CoA:carbon dioxide ligase
           alpha subunit) {Arabidopsis thaliana}
          Length = 734

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 6/94 (6%)
 Frame = -1

Query: 401 SVDMVHAKVFEQSPHIDVSEE---RLK*RVVEAEVMIG-YDGGLVTVSLHSDEMSPRSVR 234
           SV   H K+ E++P  ++SE+    L    V A   +G Y+ G V   + ++      + 
Sbjct: 266 SVQRRHQKIIEEAPAPNISEKFRANLGQAAVSAARAVGYYNAGTVEFIVDTESDQFYFME 325

Query: 233 TRTSVQAASPLNRRALGN--CSWMLRSSMSSILP 138
             T +Q   P+    +G     W +R +    LP
Sbjct: 326 MNTRLQVEHPVTEMIVGQDLVEWQIRVANGEPLP 359


>At4g13240.1 68417.m02059 hypothetical protein contains Pfam profile
           PF03759: Domain of unknown function (DUF315)
          Length = 517

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 175 LQFPSARRFSGEAACTEVRVRTDRGDI 255
           ++F  +++ S E  CTE+ V   RGD+
Sbjct: 148 VEFVPSQQISKEGVCTEIMVTRQRGDL 174


>At2g46400.1 68415.m05775 WRKY family transcription factor
          Length = 295

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = +3

Query: 108 NGIL*DGNCFRQYGRHRT--SQHPTAVPECS 194
           NG + DG+C+R+YG+     S++P A   C+
Sbjct: 100 NGSIDDGHCWRKYGQKEIHGSKNPRAYYRCT 130


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,648,483
Number of Sequences: 28952
Number of extensions: 312662
Number of successful extensions: 846
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)