Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060235.seq
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.05c |sam1||S-adenosylmethionine synthetase |Schizosacch...   141   7e-35
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    26   4.1  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   5.5  
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ...    26   5.5  
SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase |...    26   5.5  
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   7.2  
SPBC3B9.03 |||signal recognition particle receptor alpha subunit...    25   7.2  
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex...    25   7.2  
SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2 |Schizosa...    25   9.5  
SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces pom...    25   9.5  

>SPBC14F5.05c |sam1||S-adenosylmethionine synthetase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 382

 Score =  141 bits (342), Expect = 7e-35
 Identities = 64/119 (53%), Positives = 87/119 (73%)
 Frame = +1

Query: 256 GMVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVH 435
           GMV++ GEIT+++ +DYQKV+R T+K IGYDDS KGFDYKTC+V++A++QQSP+IA G+H
Sbjct: 50  GMVMVFGEITTRSQIDYQKVIRNTIKSIGYDDSEKGFDYKTCNVLVAIEQQSPDIAQGLH 109

Query: 436 ENRNDEEVGAGDQGLMFGYATDETENACR*L*CLHTNSIRKIAELKRNGEFWWARPDSK 612
             +  EE+GAGDQG+MFGYATDET         L       ++  +R+G   W RPD+K
Sbjct: 110 YEKALEELGAGDQGIMFGYATDETPEKLPLTILLAHKLNAAMSVARRDGSLPWLRPDTK 168



 Score = 81.4 bits (192), Expect = 1e-16
 Identities = 37/45 (82%), Positives = 40/45 (88%)
 Frame = +2

Query: 122 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKT 256
           FLFTSESVGEGHPDK+CDQISDAILDA L  DP +KVACET +KT
Sbjct: 5   FLFTSESVGEGHPDKICDQISDAILDACLKDDPFSKVACETASKT 49


>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
 Frame = +2

Query: 26  WANSKFRMPETSKMNGYAKTNGH-SYDMEDGSVFLFTSESVGEGHPDKMCDQISDAIL 196
           W + K  M   S       T    S+D E  S+F   S+SV E      CD+ SD  L
Sbjct: 633 WPDEKKAMESHSTRAHRRSTESKISFDSEADSLFEEASKSVPEDPVSVFCDEESDESL 690


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 23/66 (34%), Positives = 31/66 (46%)
 Frame = -3

Query: 509 SVSSVA*PNIKPWSPAPTSSSFLFSCTPAAMFGDCWSSASITLHVL*SKPLDESS*PICL 330
           SVSS +       +P  TSSS+L S +  +      SS+S TL    S  L  SS P   
Sbjct: 188 SVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLT---SSSLSTSSIPSTS 244

Query: 329 TVSRTT 312
           + S +T
Sbjct: 245 SSSSST 250


>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = -2

Query: 393 EHHTACLVIKAFGRIIITNMFDRFAHNFLIIHVSFGCDFATQ 268
           EH+  C+   + G ++++   DR    + I  +S  C F T+
Sbjct: 101 EHNIPCITFNSSGTLLLSGSIDRSLQIWDITSLSCLCKFYTK 142


>SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 266

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 289 KANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQ 408
           + N DY K+  E VK  G D+       K C  ++ L Q+
Sbjct: 106 EVNEDYAKIAYELVKLAGLDEIVTIMIGKACDSLVELQQK 145


>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 565

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 178 LVAHFVWMTLANRFRCEQKY*SIFHII 98
           L+ HFVW +      CE+K+ S  H++
Sbjct: 394 LLLHFVWKSALICVLCERKFQSWGHVV 420


>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
           Srp101|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -1

Query: 424 QQCLVIVGLVRASHCMSCNQSLWTNHHNQYV*PFRAQLFD 305
           Q  +V V + +   CM+ +QSL  + HN ++  F+ +L D
Sbjct: 61  QYSIVFVVVFQDLKCMAYSQSLLNSAHNIFLNLFKEKLED 100


>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
           subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 342

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +2

Query: 158 PDKMCDQISDAILDA-HLNQDPDAKVACETITK 253
           P K  ++  D ++ + H N DPDAK+A   ++K
Sbjct: 180 PPKEIEKTVDHVIQSEHCNIDPDAKMAVLRLSK 212


>SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 300

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 21/91 (23%), Positives = 38/91 (41%)
 Frame = -3

Query: 587 NSPFRLSSAIFLIEFVCKHYSQRHAFSVSSVA*PNIKPWSPAPTSSSFLFSCTPAAMFGD 408
           N+PF     I+L   V + +   H F  S       +    +P+ +  + +C P + F  
Sbjct: 73  NNPFSFKRRIWL-HGVLRFHRPLHLFQTSECHELIQEESVKSPSITKEVEACLPKSSFLT 131

Query: 407 CWSSASITLHVL*SKPLDESS*PICLTVSRT 315
             +S   T HV   + + +S   +C+   RT
Sbjct: 132 KPTSEKQTKHVYIRRKIYDSQHQLCIEEDRT 162


>SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 412

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 105 WKMDQYFCSHRNLLARVIQTKC 170
           W + + F S+R L A  I+T C
Sbjct: 27  WNISKTFLSYRTLTALAIETSC 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,024,461
Number of Sequences: 5004
Number of extensions: 65249
Number of successful extensions: 214
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)