Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060235.seq
(655 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0264 + 2030080-2031270 121 6e-28
01_02_0051 - 10655867-10657057 119 2e-27
01_03_0090 - 12347165-12348349 116 2e-26
12_02_0952 - 24731799-24731901,24732169-24732231,24732941-247339... 29 2.4
06_03_1318 - 29282562-29282566,29282727-29282810,29282913-292833... 29 3.2
03_06_0340 + 33252677-33252864,33253086-33254442,33254565-332546... 29 3.2
05_07_0356 + 29529422-29529517,29529613-29530200 28 5.6
12_02_0655 + 21588662-21589051 28 7.5
03_05_0640 - 26326832-26327166,26327295-26327529,26327665-263279... 27 9.9
>05_01_0264 + 2030080-2031270
Length = 396
Score = 121 bits (291), Expect = 6e-28
Identities = 59/120 (49%), Positives = 81/120 (67%), Gaps = 2/120 (1%)
Frame = +1
Query: 259 MVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHE 438
MV++ GEIT+KANVDY+K+VRET ++IG+ + G D C V++ ++QQSP+IA GVH
Sbjct: 53 MVMVFGEITTKANVDYEKIVRETCRNIGFVSADVGLDADHCKVLVNIEQQSPDIAQGVHG 112
Query: 439 N--RNDEEVGAGDQGLMFGYATDETENACR*L*CLHTNSIRKIAELKRNGEFWWARPDSK 612
+ + EE+GAGDQG MFGYATDET L T ++ E+++NG W RPD K
Sbjct: 113 HFTKRPEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCAWLRPDGK 172
Score = 83.8 bits (198), Expect = 1e-16
Identities = 36/45 (80%), Positives = 41/45 (91%)
Frame = +2
Query: 122 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKT 256
FLFTSESV EGHPDK+CDQ+SDA+LDA L +DPD+KVACET TKT
Sbjct: 7 FLFTSESVNEGHPDKLCDQVSDAVLDACLAEDPDSKVACETCTKT 51
>01_02_0051 - 10655867-10657057
Length = 396
Score = 119 bits (287), Expect = 2e-27
Identities = 58/120 (48%), Positives = 81/120 (67%), Gaps = 2/120 (1%)
Frame = +1
Query: 259 MVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHE 438
MV++ GEIT+KANVDY+K+VR+T + IG+ + G D + C V++ ++QQSP+IA GVH
Sbjct: 53 MVMVFGEITTKANVDYEKIVRDTCRGIGFVSNDVGLDAEHCKVLVNIEQQSPDIAQGVHG 112
Query: 439 N--RNDEEVGAGDQGLMFGYATDETENACR*L*CLHTNSIRKIAELKRNGEFWWARPDSK 612
+ + EE+GAGDQG MFGYATDET L T ++ E+++NG W RPD K
Sbjct: 113 HFTKRPEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGACAWLRPDGK 172
Score = 83.8 bits (198), Expect = 1e-16
Identities = 37/51 (72%), Positives = 43/51 (84%)
Frame = +2
Query: 104 MEDGSVFLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKT 256
M + FLFTSESV EGHPDK+CDQISDA+LDA L +DP++KVACET TKT
Sbjct: 1 MAEVDTFLFTSESVNEGHPDKLCDQISDAVLDACLAEDPESKVACETCTKT 51
>01_03_0090 - 12347165-12348349
Length = 394
Score = 116 bits (279), Expect = 2e-26
Identities = 57/120 (47%), Positives = 78/120 (65%), Gaps = 2/120 (1%)
Frame = +1
Query: 259 MVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHE 438
MV++ GEIT+KA VDY+K+VR+T + IG+ G D C V++ ++QQSP+IA GVH
Sbjct: 52 MVMVFGEITTKATVDYEKIVRDTCRGIGFVSDDVGLDADRCKVLVNIEQQSPDIAQGVHG 111
Query: 439 N--RNDEEVGAGDQGLMFGYATDETENACR*L*CLHTNSIRKIAELKRNGEFWWARPDSK 612
+ + EE+GAGDQG MFGYATDET L T ++ E+++NG W RPD K
Sbjct: 112 HFTKRPEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCAWLRPDGK 171
Score = 85.0 bits (201), Expect = 5e-17
Identities = 37/45 (82%), Positives = 41/45 (91%)
Frame = +2
Query: 122 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKT 256
FLFTSESV EGHPDK+CDQ+SDA+LDA L QDPD+KVACET TKT
Sbjct: 6 FLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKT 50
>12_02_0952 -
24731799-24731901,24732169-24732231,24732941-24733980,
24734094-24734339
Length = 483
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = -1
Query: 514 HSLSHLLHNRTSSPGLLPQLPRHFCSHAPQQQCLVI 407
H+ + LLH R LLP++ RHF H QQQ +++
Sbjct: 92 HAAAPLLHRRI----LLPEVDRHFKPHRCQQQRVMV 123
>06_03_1318 - 29282562-29282566,29282727-29282810,29282913-29283380,
29283735-29283917,29284362-29284467,29284627-29284651,
29284736-29284855,29284920-29284997,29285646-29285774,
29285976-29285989,29286168-29287944,29288344-29288489,
29288921-29291029
Length = 1747
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -1
Query: 538 ASTTVNGMHSLSHLLHNRTSSPGLLPQLPRHFCSHAPQ 425
+S+ +NG +L +SS G L QLPR+F S P+
Sbjct: 1675 SSSELNGQPLDDSILDIESSSFGFLSQLPRNFFSDLPE 1712
>03_06_0340 +
33252677-33252864,33253086-33254442,33254565-33254667,
33256081-33256171,33257208-33257300,33258316-33258471,
33258583-33258655
Length = 686
Score = 29.1 bits (62), Expect = 3.2
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Frame = -1
Query: 547 SLCASTTVNGMHSLSHLLHNRTSSPGLLPQLPRHFCSHAPQQQCLVIVG------LVRAS 386
+LC S + +H LS L H G+LP + H P+ + I+ L+RAS
Sbjct: 86 ALC-SAILGALHKLSALPHIEEEHVGVLPSMVEAELPHLPEDLLVQILSRLEIPDLLRAS 144
Query: 385 HCMSCNQSLWTNHHN 341
S S +T H+
Sbjct: 145 SVCSSWHSAYTTLHS 159
>05_07_0356 + 29529422-29529517,29529613-29530200
Length = 227
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -3
Query: 524 QRHAFSVSSVA*PNIKPWSPAPTSSSFLFSCTPAAMFGDCWSSAS 390
Q H S +S++ SP P+ S + SC+P A G S+S
Sbjct: 67 QAHLISPASISASGGGSPSPTPSPRSLITSCSPTAAAGSSAGSSS 111
>12_02_0655 + 21588662-21589051
Length = 129
Score = 27.9 bits (59), Expect = 7.5
Identities = 19/53 (35%), Positives = 23/53 (43%)
Frame = +1
Query: 70 WIRENQRTQL*YGRWISIFVHIGICWRGSSRQNVRPNKRRYSRRASESGSGRK 228
WI QR ++ G W RGS V P +RR SRR SG R+
Sbjct: 27 WIGGRQRPRMWIGDWREE--------RGSVAVGVAPGRRRESRRRPGSGEARR 71
>03_05_0640 -
26326832-26327166,26327295-26327529,26327665-26327908,
26328389-26328507,26328860-26329050,26329133-26329220,
26331653-26331715,26331816-26333944,26334084-26334186
Length = 1168
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Frame = +2
Query: 107 EDGSVFLFTSESVGEGHPDKM---CDQISDAIL 196
+DGS +LFTS+ E HP M D+ S+ IL
Sbjct: 765 QDGSEWLFTSKRTDESHPFTMHVNFDKFSEDIL 797
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,985,325
Number of Sequences: 37544
Number of extensions: 442369
Number of successful extensions: 1201
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1195
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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