Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060235.seq
         (655 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47946| Best HMM Match : No HMM Matches (HMM E-Value=.)             168   4e-42
SB_46130| Best HMM Match : No HMM Matches (HMM E-Value=.)             161   3e-40
SB_11655| Best HMM Match : No HMM Matches (HMM E-Value=.)             138   3e-33
SB_46129| Best HMM Match : No HMM Matches (HMM E-Value=.)              92   3e-19
SB_53305| Best HMM Match : S-AdoMet_synt_N (HMM E-Value=0.0056)        85   6e-17
SB_16847| Best HMM Match : S-AdoMet_synt_M (HMM E-Value=0)             55   6e-08
SB_31747| Best HMM Match : Myotub-related (HMM E-Value=0)              35   0.067
SB_41815| Best HMM Match : zf-CXXC (HMM E-Value=3.5e-17)               32   0.47 
SB_15158| Best HMM Match : Cadherin (HMM E-Value=7.5e-23)              31   0.62 
SB_17763| Best HMM Match : IBN_N (HMM E-Value=3.4e-20)                 31   0.82 
SB_18815| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_6406| Best HMM Match : Mis12 (HMM E-Value=0.49)                     30   1.9  
SB_2549| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.4  
SB_43848| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_14617| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  

>SB_47946| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 460

 Score =  168 bits (408), Expect = 4e-42
 Identities = 76/119 (63%), Positives = 95/119 (79%)
 Frame = +1

Query: 256 GMVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVH 435
           GM+++CGEITS ANVDYQKVVR+T+K IGYDDSSKGFDYKTC+V+ A++QQSP+IA GVH
Sbjct: 7   GMIVVCGEITSLANVDYQKVVRDTIKQIGYDDSSKGFDYKTCTVLQAIEQQSPDIAQGVH 66

Query: 436 ENRNDEEVGAGDQGLMFGYATDETENACR*L*CLHTNSIRKIAELKRNGEFWWARPDSK 612
             R+DE++GAGDQGLMFGYATDET+        L     +++A+ +RNG   W RPDSK
Sbjct: 67  IGRSDEDLGAGDQGLMFGYATDETDELMPLTVVLAHGLNKRLADCRRNGSLPWVRPDSK 125


>SB_46130| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 407

 Score =  161 bits (392), Expect = 3e-40
 Identities = 77/119 (64%), Positives = 91/119 (76%)
 Frame = +1

Query: 256 GMVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVH 435
           GM+LLCGEITS A VDYQ VVR+ +K IGYDDS KGFDYKTC+V++AL+QQS +IA GVH
Sbjct: 76  GMILLCGEITSNAVVDYQSVVRQCIKDIGYDDSEKGFDYKTCNVLVALEQQSVDIAHGVH 135

Query: 436 ENRNDEEVGAGDQGLMFGYATDETENACR*L*CLHTNSIRKIAELKRNGEFWWARPDSK 612
             R +E+VGAGDQGLMFGYATDETE        L     +K+AE +R+G   WARPDSK
Sbjct: 136 VGREEEDVGAGDQGLMFGYATDETEELMPLTVVLAHKMNQKLAEYRRDGTLPWARPDSK 194



 Score = 93.9 bits (223), Expect = 1e-19
 Identities = 41/47 (87%), Positives = 44/47 (93%)
 Frame = +2

Query: 116 SVFLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKT 256
           + FLFTSESVGEGHPDKMCDQISDAILDAHL QDP+AKVACET+ KT
Sbjct: 29  NTFLFTSESVGEGHPDKMCDQISDAILDAHLKQDPNAKVACETVAKT 75


>SB_11655| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 428

 Score =  138 bits (335), Expect = 3e-33
 Identities = 68/119 (57%), Positives = 81/119 (68%)
 Frame = +1

Query: 256 GMVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVH 435
           G+VLL GEITS A VDYQ VVR T++ IGY+DSS GFDYKTCSV+LA+ +Q   IA  VH
Sbjct: 97  GLVLLFGEITSNARVDYQAVVRNTIRDIGYNDSSTGFDYKTCSVLLAIQEQVAEIAQTVH 156

Query: 436 ENRNDEEVGAGDQGLMFGYATDETENACR*L*CLHTNSIRKIAELKRNGEFWWARPDSK 612
            NR D+E+GAGDQGLMFGYATDETE        L      ++AE ++     W  PD K
Sbjct: 157 LNRRDDEIGAGDQGLMFGYATDETEELMPLTTVLAHKLCARLAECRKGKILPWLLPDGK 215



 Score = 88.6 bits (210), Expect = 4e-18
 Identities = 41/53 (77%), Positives = 42/53 (79%)
 Frame = +2

Query: 98  YDMEDGSVFLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKT 256
           Y   D   FLFTSESV EGH DKMCDQISDA+LDAHL QDP AKVACET TKT
Sbjct: 44  YSTSDCDNFLFTSESVNEGHSDKMCDQISDAVLDAHLEQDPYAKVACETATKT 96


>SB_46129| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 91

 Score = 92.3 bits (219), Expect = 3e-19
 Identities = 40/47 (85%), Positives = 44/47 (93%)
 Frame = +2

Query: 116 SVFLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKT 256
           + FLFTSESVGEGHPDKMCDQISDAILDAHL QDP+AKVACE++ KT
Sbjct: 9   NTFLFTSESVGEGHPDKMCDQISDAILDAHLKQDPNAKVACESVAKT 55



 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 28/35 (80%), Positives = 33/35 (94%)
 Frame = +1

Query: 256 GMVLLCGEITSKANVDYQKVVRETVKHIGYDDSSK 360
           GM+++CGEITS ANVDYQKVVR+T+K IGYDDSSK
Sbjct: 56  GMIVVCGEITSLANVDYQKVVRDTIKQIGYDDSSK 90


>SB_53305| Best HMM Match : S-AdoMet_synt_N (HMM E-Value=0.0056)
          Length = 70

 Score = 84.6 bits (200), Expect = 6e-17
 Identities = 37/41 (90%), Positives = 39/41 (95%)
 Frame = +2

Query: 116 SVFLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVAC 238
           + FLFTSESVGEGHPDKMCDQISDAILDAHL QDP+AKVAC
Sbjct: 29  NTFLFTSESVGEGHPDKMCDQISDAILDAHLKQDPNAKVAC 69


>SB_16847| Best HMM Match : S-AdoMet_synt_M (HMM E-Value=0)
          Length = 192

 Score = 54.8 bits (126), Expect = 6e-08
 Identities = 26/55 (47%), Positives = 36/55 (65%)
 Frame = +1

Query: 451 EEVGAGDQGLMFGYATDETENACR*L*CLHTNSIRKIAELKRNGEFWWARPDSKN 615
           E+ GAGDQGLMFGYAT+ET++            + + +EL+RNG   W RPD+K+
Sbjct: 8   EDQGAGDQGLMFGYATNETDSLMPAPVYYAHRLVERQSELRRNGTLPWLRPDAKS 62


>SB_31747| Best HMM Match : Myotub-related (HMM E-Value=0)
          Length = 550

 Score = 34.7 bits (76), Expect = 0.067
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -2

Query: 309 LIIHVSFGCDFATQ--KHHTVLVMVSHATFASGS*FRCASRIASLIWSHILSG 157
           L  H++F C       + H +   +S +  A  + FRC+ R  S++W H+ +G
Sbjct: 263 LTCHLNFACRVCRTYPRLHVIPSSISDSDLAKVASFRCSGRFPSIVWRHMTNG 315


>SB_41815| Best HMM Match : zf-CXXC (HMM E-Value=3.5e-17)
          Length = 906

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = +2

Query: 503 RQRMHAVDCSACTQTQSGKLQSSSEMENFGGQDQIQKT 616
           R+R     C ACT+   G+ ++  +M+ FGG  +++++
Sbjct: 486 RRRTRCGQCEACTREDCGECRTCKDMKKFGGPGRMKQS 523


>SB_15158| Best HMM Match : Cadherin (HMM E-Value=7.5e-23)
          Length = 390

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = +1

Query: 274 GEITSKANVDYQKVVRETV---KHIGYDDSSKGFDYK 375
           GEITS  N+D +K+    +   K I YD    G+DY+
Sbjct: 103 GEITSNVNIDREKLPGSNLLEFKAIAYDAKGAGYDYR 139


>SB_17763| Best HMM Match : IBN_N (HMM E-Value=3.4e-20)
          Length = 681

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 496 LHNRTSSPGLLPQLPRHFCSHAPQQQCLVIVGL 398
           L N T+ P + PQ P H  SHA +   ++I G+
Sbjct: 99  LGNETARPAIAPQEPEHLVSHANKILTVIIQGM 131


>SB_18815| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 548

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = +3

Query: 6   EVWGYISGLTLNSECRRLQK*MDTRK-PTDTVMIWKMDQYFCSH 134
           +VW  ++GL+ N E     K + T++ PT+ V++W + + F +H
Sbjct: 418 QVWQMMAGLSENDELVDSYKHLFTKESPTEQVIVWDIHRTFPAH 461


>SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3287

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = +3

Query: 6   EVWGYISGLTLNSECRRLQK*MDTRK-PTDTVMIWKMDQYFCSH 134
           +VW  ++GL+ N E     K + T++ PT+ V++W + + F +H
Sbjct: 72  QVWQMMAGLSENDELVDSYKHLFTKESPTEQVIVWDIHRTFPAH 115


>SB_6406| Best HMM Match : Mis12 (HMM E-Value=0.49)
          Length = 714

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
 Frame = +2

Query: 230 VACETITKTVWCFCVAKSHPKLTWII---KKLCAKRSNILVMMIRPK 361
           V C  IT T+W  C  +  P  T  +    KLC+    + V ++ P+
Sbjct: 599 VTCSPITWTIWLACRTRGMPVYTAFVMQHSKLCSMIRRLAVWIVEPE 645


>SB_2549| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1155

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +2

Query: 47  MPETSKMNGYAKTNGHSYDMEDGSVFLFTSESVGE-GHPDKMCDQISDAILDAHLNQDPD 223
           MP      G +K N  + D  D   +L   +S+    + D++C   +  I  AHL QDPD
Sbjct: 196 MPYGGGKRGKSKKNSSTLDTGDLETWLKGRKSITRVRNHDELCAARALVIGMAHLTQDPD 255


>SB_43848| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 547

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -1

Query: 514 HSLSHLLHNRTSSPGLLPQLPRHFCSHAPQQQCLVIVGLVRASHCMS 374
           H +SH L +    P ++     H  SH P   CL I+G   + H +S
Sbjct: 325 HRVSHFLSSGIPLP-IIGLSSHHRVSHFPSSGCLPIIGYPTSHHRVS 370


>SB_14617| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 598

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +2

Query: 47  MPETSKMNGYAKTNGHSYDMEDGSVFLFTSESVGE-GHPDKMCDQISDAILDAHLNQDPD 223
           MP  +   G +K N  + D  D   +L    S+    + D++C   +  I  AHL +DPD
Sbjct: 241 MPFGAGKRGKSKKNSSTLDTGDLETWLKGKRSITRVRNHDELCAARATVIGMAHLTKDPD 300


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,264,740
Number of Sequences: 59808
Number of extensions: 520992
Number of successful extensions: 1591
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1582
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)