Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060235.seq
         (655 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g17390.1 68416.m02222 S-adenosylmethionine synthetase, putati...   120   1e-27
At4g01850.1 68417.m00242 S-adenosylmethionine synthetase 2 (SAM2...   115   3e-26
At1g02500.2 68414.m00201 S-adenosylmethionine synthetase 1 (SAM1...   115   3e-26
At1g02500.1 68414.m00200 S-adenosylmethionine synthetase 1 (SAM1...   115   3e-26
At2g36880.1 68415.m04521 S-adenosylmethionine synthetase, putati...   111   4e-25
At3g48310.1 68416.m05272 cytochrome P450 71A22, putative (CYP71A...    27   8.2  

>At3g17390.1 68416.m02222 S-adenosylmethionine synthetase, putative
           similar to S-adenosylmethionine synthetase 2 (Methionine
           adenosyltransferase 2, AdoMet synthetase 2)
           [Catharanthus roseus] SWISS-PROT:Q96552
          Length = 393

 Score =  120 bits (288), Expect = 1e-27
 Identities = 59/120 (49%), Positives = 80/120 (66%), Gaps = 2/120 (1%)
 Frame = +1

Query: 259 MVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHE 438
           MV++ GEIT+KANVDY+++VR+T + IG+  +  G D   C V++ ++QQSP+IA GVH 
Sbjct: 50  MVMVFGEITTKANVDYEQIVRKTCREIGFVSADVGLDADNCKVLVNIEQQSPDIAQGVHG 109

Query: 439 N--RNDEEVGAGDQGLMFGYATDETENACR*L*CLHTNSIRKIAELKRNGEFWWARPDSK 612
           +  +  EEVGAGDQG MFGYATDET         L T    K+ E+++NG   W RPD K
Sbjct: 110 HLTKKPEEVGAGDQGHMFGYATDETPELMPLTHVLATKLGAKLTEVRKNGTCPWLRPDGK 169



 Score = 86.2 bits (204), Expect = 2e-17
 Identities = 43/70 (61%), Positives = 51/70 (72%), Gaps = 4/70 (5%)
 Frame = +2

Query: 122 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKT----VWCFCVAKSHP 289
           FLFTSESV EGHPDK+CDQISDAILDA L QDP++KVACET TKT    V+     K++ 
Sbjct: 4   FLFTSESVNEGHPDKLCDQISDAILDACLEQDPESKVACETCTKTNMVMVFGEITTKANV 63

Query: 290 KLTWIIKKLC 319
               I++K C
Sbjct: 64  DYEQIVRKTC 73


>At4g01850.1 68417.m00242 S-adenosylmethionine synthetase 2 (SAM2)
           identical to S-adenosylmethionine synthetase 2
           (Methionine adenosyltransferase 2, AdoMet synthetase 2)
           [Arabidopsis thaliana] SWISS-PROT:P17562
          Length = 393

 Score =  115 bits (276), Expect = 3e-26
 Identities = 55/120 (45%), Positives = 78/120 (65%), Gaps = 2/120 (1%)
 Frame = +1

Query: 259 MVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHE 438
           MV++ GEIT+KA +DY+K+VR+T + IG+     G D   C V++ ++QQSP+IA GVH 
Sbjct: 50  MVMVFGEITTKATIDYEKIVRDTCRSIGFISDDVGLDADKCKVLVNIEQQSPDIAQGVHG 109

Query: 439 N--RNDEEVGAGDQGLMFGYATDETENACR*L*CLHTNSIRKIAELKRNGEFWWARPDSK 612
           +  +  E++GAGDQG MFGYATDET         L T    ++ E+++NG   W RPD K
Sbjct: 110 HFTKRPEDIGAGDQGHMFGYATDETPELMPLSHVLATKIGARLTEVRKNGTCRWLRPDGK 169



 Score = 86.2 bits (204), Expect = 2e-17
 Identities = 38/45 (84%), Positives = 41/45 (91%)
 Frame = +2

Query: 122 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKT 256
           FLFTSESV EGHPDK+CDQISDA+LDA L QDPD+KVACET TKT
Sbjct: 4   FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKT 48


>At1g02500.2 68414.m00201 S-adenosylmethionine synthetase 1 (SAM1)
           identical to S-adenosylmethionine synthetase 1
           (Methionine adenosyltransferase 1, AdoMet synthetase 1)
           [Arabidopsis thaliana] SWISS-PROT:P23686
          Length = 393

 Score =  115 bits (276), Expect = 3e-26
 Identities = 57/120 (47%), Positives = 78/120 (65%), Gaps = 2/120 (1%)
 Frame = +1

Query: 259 MVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHE 438
           MV++ GEIT+KA VDY+K+VR+T + IG+     G D   C V++ ++QQSP+IA GVH 
Sbjct: 50  MVMVFGEITTKATVDYEKIVRDTCRAIGFVSDDVGLDADKCKVLVNIEQQSPDIAQGVHG 109

Query: 439 N--RNDEEVGAGDQGLMFGYATDETENACR*L*CLHTNSIRKIAELKRNGEFWWARPDSK 612
           +  +  EE+GAGDQG MFGYATDET         L T    ++ E+++NG   W RPD K
Sbjct: 110 HFTKCPEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCAWLRPDGK 169



 Score = 86.2 bits (204), Expect = 2e-17
 Identities = 38/45 (84%), Positives = 41/45 (91%)
 Frame = +2

Query: 122 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKT 256
           FLFTSESV EGHPDK+CDQISDA+LDA L QDPD+KVACET TKT
Sbjct: 4   FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKT 48


>At1g02500.1 68414.m00200 S-adenosylmethionine synthetase 1 (SAM1)
           identical to S-adenosylmethionine synthetase 1
           (Methionine adenosyltransferase 1, AdoMet synthetase 1)
           [Arabidopsis thaliana] SWISS-PROT:P23686
          Length = 393

 Score =  115 bits (276), Expect = 3e-26
 Identities = 57/120 (47%), Positives = 78/120 (65%), Gaps = 2/120 (1%)
 Frame = +1

Query: 259 MVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHE 438
           MV++ GEIT+KA VDY+K+VR+T + IG+     G D   C V++ ++QQSP+IA GVH 
Sbjct: 50  MVMVFGEITTKATVDYEKIVRDTCRAIGFVSDDVGLDADKCKVLVNIEQQSPDIAQGVHG 109

Query: 439 N--RNDEEVGAGDQGLMFGYATDETENACR*L*CLHTNSIRKIAELKRNGEFWWARPDSK 612
           +  +  EE+GAGDQG MFGYATDET         L T    ++ E+++NG   W RPD K
Sbjct: 110 HFTKCPEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCAWLRPDGK 169



 Score = 86.2 bits (204), Expect = 2e-17
 Identities = 38/45 (84%), Positives = 41/45 (91%)
 Frame = +2

Query: 122 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKT 256
           FLFTSESV EGHPDK+CDQISDA+LDA L QDPD+KVACET TKT
Sbjct: 4   FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKT 48


>At2g36880.1 68415.m04521 S-adenosylmethionine synthetase, putative
           similar to S-adenosylmethionine synthetase 3 (Methionine
           adenosyltransferase 3, AdoMet synthetase 3)
           [Lycopersicon esculentum] SWISS-PROT:P43282
          Length = 390

 Score =  111 bits (267), Expect = 4e-25
 Identities = 55/120 (45%), Positives = 77/120 (64%), Gaps = 2/120 (1%)
 Frame = +1

Query: 259 MVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHE 438
           MV++ GEIT+ A VDY+K+VR T + IG+  +  G D   C+V++ ++QQSP+IA GVH 
Sbjct: 50  MVMVFGEITTAAKVDYEKIVRSTCREIGFISADVGLDADKCNVLVNIEQQSPDIAQGVHG 109

Query: 439 N--RNDEEVGAGDQGLMFGYATDETENACR*L*CLHTNSIRKIAELKRNGEFWWARPDSK 612
           +  +  E++GAGDQG MFGYATDET         L T    K+ E+++N    W RPD K
Sbjct: 110 HLTKKPEDIGAGDQGHMFGYATDETPELMPLTHVLATKLGAKLTEVRKNKTCPWLRPDGK 169



 Score = 85.0 bits (201), Expect = 4e-17
 Identities = 38/45 (84%), Positives = 41/45 (91%)
 Frame = +2

Query: 122 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKT 256
           FLFTSESV EGHPDK+CDQISDAILDA L QDP++KVACET TKT
Sbjct: 4   FLFTSESVNEGHPDKLCDQISDAILDACLEQDPESKVACETCTKT 48


>At3g48310.1 68416.m05272 cytochrome P450 71A22, putative (CYP71A22)
           Identical to Cytochrome P450 71A22
           (SP:Q9STL1)[Arabidopsis thaliana]
          Length = 490

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +2

Query: 173 DQISDAILDAHLNQDPDAKVACETITKTVWCFCVAKSHPKLTWI 304
           D IS   L    + + D K   + +TK +  FCV    P L WI
Sbjct: 179 DVISRVALGRKYSDETDFKELMKRLTKLLGEFCVGTYVPWLAWI 222


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,096,629
Number of Sequences: 28952
Number of extensions: 359350
Number of successful extensions: 959
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)