Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060234.seq
         (538 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.09 |||alanine racemase|Schizosaccharomyces pombe|chr 1||...    27   1.3  
SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   1.8  
SPBC32H8.04c |||rRNA processing protein Fcf1 |Schizosaccharomyce...    26   3.1  
SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces ...    25   5.4  
SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyc...    25   7.2  
SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit T...    25   7.2  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   9.5  
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc...    25   9.5  
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce...    25   9.5  

>SPAC644.09 |||alanine racemase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 237

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 13/59 (22%), Positives = 30/59 (50%)
 Frame = +3

Query: 252 ISACSPYFESIFLQNSHPHPIIFLKDVRFAEMKSLLDFMYKGEVNVGQNMLPMFLKTAE 428
           I +C     S   Q+++   ++ +   +F  +++L++    G+ + G+N +  FLK  E
Sbjct: 4   IHSCLDLIRSQIQQSANGRNVLLVAVSKFHPVETLMEAYNAGQRHFGENYMQEFLKKVE 62


>SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 511

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = -3

Query: 119 WSIVGANVSERAFAKILPSQTPPDPYLALSF 27
           W++V   +SE+ FAK +P++   + +L  ++
Sbjct: 276 WNVVPKQLSEKRFAKYVPTKEMVESFLLFAY 306


>SPBC32H8.04c |||rRNA processing protein Fcf1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 192

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -2

Query: 306 VDANFAGICFQNMVSMLKYCLVCLDCLSITSESD 205
           +D NF   C Q  + + +  + CL   +I   SD
Sbjct: 69  IDTNFINFCLQQKIDLFEGLMTCLYAKTIPCISD 102


>SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 486

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +3

Query: 378 EVNVGQNMLPMFLKTAESLQVRGLTENNTLNPKSEE 485
           EVN GQN     +  A  ++   L E  T +PK EE
Sbjct: 225 EVNFGQNPFLYDIDYAIQMEKNKLFEQATKSPKQEE 260


>SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 211 LACDGETVKAHQTIFQH 261
           L CD  T +AH+  FQH
Sbjct: 220 LLCDSRTGRAHRLTFQH 236


>SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit Tfb4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 91  SLTLAPTMDQQFCLRWNNHPNNLTDVLASLLQREALCDVT 210
           +L   PTM+  FC +  N P N+ ++    L  E   D T
Sbjct: 168 ALQYIPTMNCIFCAQKKNIPINVCNIEGGTLFLEQAADAT 207


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/42 (26%), Positives = 24/42 (57%)
 Frame = -2

Query: 279 FQNMVSMLKYCLVCLDCLSITSESDITESLSLQKTRKHIGQI 154
           F +  S++ YC   ++ LSI  E+ +++S     ++K+  +I
Sbjct: 147 FSDWQSLVSYCCQAIEKLSIAEETYVSDSEEEPISQKNYQEI 188


>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +3

Query: 420 TAESLQVRGLTENNTLNPKSEERSTPVVGARTYPARSS 533
           TA  L V   ++ + LN     + + ++G +TYP+  S
Sbjct: 292 TATGLPVLPASDIDPLNLTGNTQDSMIIGQQTYPSHGS 329


>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 818

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +1

Query: 49  SGGVCDGKIFANARSLTLAPTMDQQFCLRWNNHPNNLT 162
           SGG    K+    R  T+ P  D++   + N  PN LT
Sbjct: 271 SGGKLKNKMSTLFRRKTIMPKKDKKPSHKSNGRPNKLT 308


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,384,832
Number of Sequences: 5004
Number of extensions: 50645
Number of successful extensions: 165
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)