Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060234.seq
(538 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0203 + 1639993-1641141 31 0.44
08_01_0802 - 7754561-7755628 31 0.77
08_02_1308 - 26024491-26025405 30 1.0
08_01_0799 + 7734031-7735102,7735453-7735475 30 1.0
03_04_0075 + 17066321-17066381,17066476-17067534,17067641-17067927 30 1.0
10_08_0082 + 14713989-14714046,14714109-14714953 30 1.3
10_08_0076 + 14685364-14686468,14686521-14686540,14686614-146867... 28 4.1
08_01_0794 - 7687480-7687798,7687817-7688523 28 4.1
08_01_0200 + 1632883-1633913,1634620-1634677 28 4.1
07_03_1529 + 27491963-27492465,27493045-27493154,27493384-274935... 28 4.1
05_03_0604 - 16132173-16132391,16132488-16132556,16132824-161328... 28 4.1
01_05_0215 + 19374279-19374327,19374629-19374633,19376902-193769... 28 4.1
01_01_0390 - 3014845-3015417 28 4.1
10_08_0513 + 18460095-18460170,18460362-18460441,18461029-184614... 28 5.4
08_01_0027 - 195321-195932,197206-197415 28 5.4
02_01_0756 - 5612722-5613906 28 5.4
12_02_0032 + 12495023-12495133,12498408-12498467,12498750-124988... 27 7.2
08_02_1301 - 25977012-25978037 27 7.2
07_03_0323 - 16773826-16774569,16774976-16775211,16775337-16775646 27 7.2
07_01_0503 - 3751028-3751063,3751145-3751231,3751333-3751410,375... 27 7.2
04_04_1219 + 31835854-31836105,31836481-31837152 27 7.2
01_07_0176 - 41733845-41734834,41736058-41736588 27 7.2
11_06_0463 + 23879587-23879771,23879783-23881658 27 9.5
10_08_0087 + 14730936-14732027 27 9.5
08_01_0801 - 7750548-7751708 27 9.5
>08_01_0203 + 1639993-1641141
Length = 382
Score = 31.5 bits (68), Expect = 0.44
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +1
Query: 148 PNNLTDVLASLLQREALCDVTLACDGETVKAHQTIFQHAHHILKA 282
P+N+ LA LL + DVTL GE AH+ + + KA
Sbjct: 175 PSNILGHLAGLLGDKGTADVTLVVRGEEFAAHRAVLAMRSPVFKA 219
>08_01_0802 - 7754561-7755628
Length = 355
Score = 30.7 bits (66), Expect = 0.77
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +1
Query: 148 PNNLTDVLASLLQREALCDVTLACDGETVKAHQTIFQHAHHILKAYSC 291
P+N+ L LL+ + DV GET AH+ + + KA C
Sbjct: 178 PSNMMQQLGDLLESKEGADVVFDVAGETFPAHKLVLAMRSPVFKAELC 225
>08_02_1308 - 26024491-26025405
Length = 304
Score = 30.3 bits (65), Expect = 1.0
Identities = 16/65 (24%), Positives = 30/65 (46%)
Frame = +1
Query: 148 PNNLTDVLASLLQREALCDVTLACDGETVKAHQTIFQHAHHILKAYSCKIRIHIPLYSLK 327
P+++ L LL R DV+ DGET AH+ + + +A + S+
Sbjct: 111 PSDIGAHLGGLLDRGEGTDVSFLVDGETFPAHRAVLAARSPVFRAELLGSMAESKMSSIT 170
Query: 328 MYDLQ 342
++D++
Sbjct: 171 LHDIE 175
>08_01_0799 + 7734031-7735102,7735453-7735475
Length = 364
Score = 30.3 bits (65), Expect = 1.0
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +1
Query: 139 NNHPNNLTDVLASLLQREALCDVTLACDGETVKAHQTIFQHAHHILKA 282
N P++L++ LL++ DVT GE + AH+ I + KA
Sbjct: 171 NVPPSDLSENFGELLEKGEGSDVTFVVGGEKIAAHKIILAARSSVFKA 218
>03_04_0075 + 17066321-17066381,17066476-17067534,17067641-17067927
Length = 468
Score = 30.3 bits (65), Expect = 1.0
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = -3
Query: 251 IVWCALTVSPSQ--ARVTSQRASLCRRLASTSVRLLGWLFQRKQNCWSIVGANVSER 87
I W ++ +P A VT + R++ + + GW + +K+ WSIVGA +E+
Sbjct: 34 IKWDVISWTPDGYVAMVTMSNYQMYRQILAPGWTV-GWSWAKKEVIWSIVGAQATEQ 89
>10_08_0082 + 14713989-14714046,14714109-14714953
Length = 300
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 148 PNNLTDVLASLLQREALCDVTLACDGETVKAHQTIFQHAHHILKA 282
P++L L LL+ E DV G+T+ AH+ + + KA
Sbjct: 113 PSDLNQQLGDLLESEKGADVVFEVGGQTLAAHRCVLAARSPVFKA 157
>10_08_0076 +
14685364-14686468,14686521-14686540,14686614-14686749,
14687537-14687664,14687742-14687855
Length = 500
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 148 PNNLTDVLASLLQREALCDVTLACDGETVKAHQTI 252
P++L L LL+ E DV GET AH+ +
Sbjct: 183 PSDLNQQLVDLLETEKGADVVFEVSGETFAAHRCL 217
>08_01_0794 - 7687480-7687798,7687817-7688523
Length = 341
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +1
Query: 148 PNNLTDVLASLLQREALCDVTLACDGETVKAHQTIFQHAHHILKA 282
P+++ + LL++ DVT GE + AH+ + + KA
Sbjct: 173 PSDILENFGELLEKGEGADVTFVVGGEKIAAHKIVLAARSSVFKA 217
>08_01_0200 + 1632883-1633913,1634620-1634677
Length = 362
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +1
Query: 148 PNNLTDVLASLLQREALCDVTLACDGETVKAHQTIFQHAHHILKA 282
P+N+ L + ++ E DVT A GET AH+ + + KA
Sbjct: 162 PSNILRQLVAQVESEG-ADVTFAVQGETFTAHRLMLAARSPVFKA 205
>07_03_1529 +
27491963-27492465,27493045-27493154,27493384-27493510,
27494082-27494430,27494975-27495251,27496236-27496333,
27498090-27498214,27498270-27498326,27498328-27498370,
27498581-27498667,27498802-27498882,27499735-27499901,
27499987-27500098,27500188-27500390,27500473-27500607,
27501106-27501205
Length = 857
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = +1
Query: 148 PNNLTDVLASLLQREALCDVTLACDGETVKAHQTIFQHAHHILKA 282
P+N++ + LL D+T DGE AH+ + + +A
Sbjct: 294 PSNMSQHIGQLLTDGKRTDITFEVDGEVFPAHKVVLAARSPVFRA 338
>05_03_0604 -
16132173-16132391,16132488-16132556,16132824-16132898,
16132981-16133113,16133188-16133297,16133360-16133407,
16133657-16133983,16135006-16135233,16135360-16135689,
16135780-16136586
Length = 781
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +3
Query: 309 PIIFLKDVRFAEMKSLLDFMYKGEVNVGQNMLPMFLKTAESLQVRGL 449
P I L V + + SLL+++Y G + + L L+ + +V+ L
Sbjct: 244 PAIELPSVSYPVLHSLLEYIYTGSTQISEWQLVSLLELSSQFKVKPL 290
>01_05_0215 +
19374279-19374327,19374629-19374633,19376902-19376956,
19377159-19377334,19378020-19378241,19378334-19378572,
19379201-19379726,19379801-19380074,19380524-19381187,
19381604-19381832,19381924-19382190,19382308-19382496,
19382664-19383308
Length = 1179
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +1
Query: 55 GVCDGKIFANARSLTLAPTMDQQFCLRWNNHPNNLTDVLASLLQREAL 198
G+ GK+ RSLT M Q+ + W + P N + + + L +AL
Sbjct: 704 GLAGGKLVERIRSLTFKSVMYQE--ISWFDKPENSSGSIGARLSTDAL 749
>01_01_0390 - 3014845-3015417
Length = 190
Score = 28.3 bits (60), Expect = 4.1
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +3
Query: 222 WRDSQGTPDNISACSPYFESIFLQNSHPH 308
W D++ N+ C + ++I L HPH
Sbjct: 118 WEDARDAYTNVEWCRSHLDAILLMLDHPH 146
>10_08_0513 +
18460095-18460170,18460362-18460441,18461029-18461491,
18461914-18462073,18462177-18462451,18462634-18462801,
18463012-18463064
Length = 424
Score = 27.9 bits (59), Expect = 5.4
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 152 LGWLFQRKQNCWSIVGANVSER 87
LGW +Q+K+ WS+ GA E+
Sbjct: 73 LGWTWQQKEVIWSMYGAQAIEQ 94
>08_01_0027 - 195321-195932,197206-197415
Length = 273
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +3
Query: 252 ISACSPYFESIFLQN--SHPHPIIFLKDVRFAEMKSLLDFMYKGEVNVGQ 395
+++CSP FES+FL + I + D+ +L+ F+Y G + + Q
Sbjct: 126 LASCSPVFESMFLHDLKEKESSTININDMCLESCSALIGFIY-GTIKLDQ 174
>02_01_0756 - 5612722-5613906
Length = 394
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +3
Query: 237 GTPDNISACSPYFESIFLQNSHPHPIIFLKDVRFAEMKSLLDFMYK 374
G I +P+ E++F NS+P +D +K LLDF K
Sbjct: 156 GLATKIELTTPHSEAVFA-NSYPPSACVFRDDLMVYLKPLLDFFSK 200
>12_02_0032 +
12495023-12495133,12498408-12498467,12498750-12498807,
12499006-12499382
Length = 201
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -2
Query: 534 ANSARDRFSRPLLASIALPTSDSMYCSLSNL 442
++S + +SRPL S ALP SD Y L
Sbjct: 140 SDSVKAMYSRPLEDSFALPLSDEAYLEFLQL 170
>08_02_1301 - 25977012-25978037
Length = 341
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +1
Query: 151 NNLTDVLASLLQREALCDVTLACDGETVKAHQTIFQHAHHILKA 282
+NL L ++ R DV+ + GET AH+ + + KA
Sbjct: 155 SNLGGQLGGIVDRADCSDVSFSVGGETFHAHRAVLAARSPVFKA 198
>07_03_0323 - 16773826-16774569,16774976-16775211,16775337-16775646
Length = 429
Score = 27.5 bits (58), Expect = 7.2
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = +3
Query: 294 NSHPHPIIFLKDVRFAEMKSLLDFMYKGEVNVGQNMLPMFLKTAESLQVRGLTENNTLNP 473
N+ +P++ A++ +L+ + + N G N P K AE L+VR ++T NP
Sbjct: 199 NNAENPMLAQVLAHQAQLMNLMMQQLQNQQNQGNNHAPPQNKLAEFLRVRPPVLSSTTNP 258
>07_01_0503 -
3751028-3751063,3751145-3751231,3751333-3751410,
3751488-3751583,3752124-3752210,3752289-3752357,
3752511-3752600,3752601-3752720,3752907-3753004,
3753084-3753193,3753463-3753533,3753679-3753714,
3753862-3753973,3754495-3754700
Length = 431
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +1
Query: 1 GTRRCVCGQKDSAR*GSGGVCDGKIFANA-RSLTLAPTMDQQFCLRWNNHPNN 156
G+RRC G +A + GV +GK+ A + + L ++Q + + P +
Sbjct: 18 GSRRCFSGDAAAAAAAAAGVAEGKVGGGAGKEVNLFTAINQALHIALDTDPRS 70
>04_04_1219 + 31835854-31836105,31836481-31837152
Length = 307
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +1
Query: 148 PNNLTDVLASLLQREALCDVTLACDGETVKAHQTIFQHAHHILKA 282
P+NL LA +L + DV + GE +AH + + +A
Sbjct: 123 PSNLHQHLAGMLHGVEIADVEFSVGGEPFRAHACVLAARSPVFRA 167
>01_07_0176 - 41733845-41734834,41736058-41736588
Length = 506
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +1
Query: 163 DVLASLLQREALCDVTLACDGETVKAHQTIFQHAHHILKAYSC 291
D L L+ +A DVT + +G V AH+ I + + C
Sbjct: 11 DYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFC 53
>11_06_0463 + 23879587-23879771,23879783-23881658
Length = 686
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +1
Query: 169 LASLLQREALCDVTLACDGETVKAHQTIFQHAHHILKA 282
L LL EA DV DGE AH+ I + +A
Sbjct: 503 LGDLLASEAAADVRFNVDGEAFAAHRCILAARSPVFRA 540
>10_08_0087 + 14730936-14732027
Length = 363
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = +1
Query: 148 PNNLTDVLASLLQREALCDVTLACDGETVKAHQTIFQHAHHILKA 282
P+++ LL+ E DV L G+T AH+ + + +A
Sbjct: 177 PSDMNQQFGDLLETEKGADVVLEVGGQTFAAHRCVLAARSPVFRA 221
>08_01_0801 - 7750548-7751708
Length = 386
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/65 (24%), Positives = 27/65 (41%)
Frame = +1
Query: 148 PNNLTDVLASLLQREALCDVTLACDGETVKAHQTIFQHAHHILKAYSCKIRIHIPLYSLK 327
P ++ A+LLQ + DVT GE H+ + + KA C + +
Sbjct: 184 PPDIKRQFANLLQSKEGADVTFDVAGEPFSVHKLVLAMRSPVFKAELCGLLREPGTQPIT 243
Query: 328 MYDLQ 342
+ D+Q
Sbjct: 244 IVDMQ 248
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,925,691
Number of Sequences: 37544
Number of extensions: 340393
Number of successful extensions: 1033
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1033
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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