Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060234.seq
(538 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_2676| Best HMM Match : Kelch_1 (HMM E-Value=0) 43 2e-04
SB_26836| Best HMM Match : BTB (HMM E-Value=1.1e-37) 40 0.002
SB_55145| Best HMM Match : Kelch_1 (HMM E-Value=0) 36 0.016
SB_40385| Best HMM Match : Kelch_1 (HMM E-Value=0) 34 0.064
SB_13053| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.11
SB_37574| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.15
SB_30927| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.34
SB_15301| Best HMM Match : Kelch_1 (HMM E-Value=0) 32 0.34
SB_8385| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.45
SB_45623| Best HMM Match : BTB (HMM E-Value=1.4e-36) 31 0.79
SB_28350| Best HMM Match : BTB (HMM E-Value=1.1e-38) 30 1.4
SB_38099| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_54322| Best HMM Match : Kelch_1 (HMM E-Value=0) 29 2.4
SB_24478| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_35310| Best HMM Match : Cadherin (HMM E-Value=5.9e-23) 28 5.6
SB_34102| Best HMM Match : Kelch_1 (HMM E-Value=0) 27 7.3
SB_25086| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_1926| Best HMM Match : PH (HMM E-Value=1.4e-23) 27 7.3
SB_46088| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_1701| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_384| Best HMM Match : IBR (HMM E-Value=1.1e-12) 27 7.3
>SB_2676| Best HMM Match : Kelch_1 (HMM E-Value=0)
Length = 645
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Frame = +3
Query: 252 ISACSPYFESIFLQN--SHPHPIIFLKDVRFAEMKSLLDFMYKGEVNVGQNMLPMFLKTA 425
+SACS YF+++F N +I++K + ++ L+DF Y G+ + Q + + L A
Sbjct: 50 LSACSAYFDAMFTGNLLESKKQVIYIKGIDETALQLLVDFAYTGKAEITQENVQLLLPAA 109
Query: 426 ESLQV 440
LQ+
Sbjct: 110 NMLQL 114
Score = 27.5 bits (58), Expect = 7.3
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +1
Query: 145 HPNNLTDVLASLLQREALCDVTLACDGETVKAHQTI 252
H L L L QR+ LCDV L + AH+ +
Sbjct: 14 HSKQLLIGLNQLRQRKELCDVELCVGNVQISAHRVV 49
>SB_26836| Best HMM Match : BTB (HMM E-Value=1.1e-37)
Length = 521
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Frame = +3
Query: 252 ISACSPYFESIF---LQNSHPHPIIFLKDVRFAEMKSLLDFMYKGEVNVGQNMLPMFLKT 422
+SA SPYFE +F L+ S+ + ++ + +LLDF+Y G +NV + + L
Sbjct: 52 VSASSPYFEVLFSGGLRESYLDTVT-IQGIDSETFSALLDFIYTGVINVNEENVQQLLPA 110
Query: 423 AESLQV 440
A+ LQ+
Sbjct: 111 AKMLQL 116
>SB_55145| Best HMM Match : Kelch_1 (HMM E-Value=0)
Length = 625
Score = 36.3 bits (80), Expect = 0.016
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +1
Query: 118 QQFCLRWNNHPNNLTDVLASLLQREALCDVTLACDGETVKAHQTI 252
Q+F N+ P+ +L LL++E LCDVT+ ++ H+ +
Sbjct: 7 QEFTYEANDLPSQAFTILTQLLEQEKLCDVTIKAGERKIRCHRVV 51
>SB_40385| Best HMM Match : Kelch_1 (HMM E-Value=0)
Length = 823
Score = 34.3 bits (75), Expect = 0.064
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 139 NNHPNNLTDVLASLLQREALCDVTLACDGETVKAHQTI 252
+ HP D L +L Q E LCDV + T+ AH+ +
Sbjct: 39 DRHPKQTLDSLEALRQCEELCDVVIKVGSSTIHAHRVV 76
Score = 34.3 bits (75), Expect = 0.064
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = +3
Query: 252 ISACSPYFESIFLQN--SHPHPIIFLKDVRFAEMKSLLDFMYKGEVNVGQNMLPMFLKTA 425
++ACSPYF ++F + I ++DV + M L+ F Y + + + + L A
Sbjct: 77 LAACSPYFRAMFTREMAESRQAEITIRDVDESAMNLLITFAYTASITIEETNVQTLLPAA 136
Query: 426 ESLQVRGLTE 455
LQ+ + E
Sbjct: 137 CLLQLTEIQE 146
>SB_13053| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 581
Score = 33.5 bits (73), Expect = 0.11
Identities = 16/65 (24%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = +3
Query: 252 ISACSPYFESIFLQN--SHPHPIIFLKDVRFAEMKSLLDFMYKGEVNVGQNMLPMFLKTA 425
++A SPYF ++F N I L D+ ++ ++++ Y G++ + ++ + L +
Sbjct: 51 LAASSPYFRAMFTSNLLECTQRTITLYDIDVGALQQIVEYFYTGKITIDEDNVQFLLHAS 110
Query: 426 ESLQV 440
LQV
Sbjct: 111 CLLQV 115
>SB_37574| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 559
Score = 33.1 bits (72), Expect = 0.15
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +3
Query: 252 ISACSPYFESIFLQN--SHPHPIIFLKDVRFAEMKSLLDFMYKGEVNVGQNMLPMFLKTA 425
+++CS YF ++F II +KD+ M+ L++F Y G V + + L TA
Sbjct: 30 LASCSAYFYAMFNGELAESKQKIITMKDILPDYMQVLVEFAYTGRVEITVENVQNLLATA 89
Query: 426 ESLQ 437
LQ
Sbjct: 90 SLLQ 93
>SB_30927| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 501
Score = 31.9 bits (69), Expect = 0.34
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +1
Query: 142 NHPNNLTDVLASLLQREALCDVTLACDGETVKAHQTIFQHAHHILKA 282
NH N ++ L ++ LCDV L G + H+ + A L+A
Sbjct: 11 NHSNEALQMMNELRKKRELCDVLLHVGGREFRGHRIVLAGASSYLRA 57
Score = 27.1 bits (57), Expect = 9.7
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = +3
Query: 225 RDSQGTPDNISACSPYFESIFLQNSHPHPI--IFLKDVRFAEMKSLLDFMYKGEVNVGQN 398
R+ +G ++ S Y ++F + I L+ + A M+ LLDF+Y G V++
Sbjct: 39 REFRGHRIVLAGASSYLRAMFTNGMLESGMRDIKLQGIDPAVMEILLDFVYTGIVDISVE 98
Query: 399 MLPMFLKTAESLQVRGLTE 455
+ L A L ++ L++
Sbjct: 99 NVQALLSGATLLNLQTLSQ 117
>SB_15301| Best HMM Match : Kelch_1 (HMM E-Value=0)
Length = 590
Score = 31.9 bits (69), Expect = 0.34
Identities = 18/70 (25%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Frame = +3
Query: 252 ISACSPYFESIFLQN--SHPHPIIFLKDVRFAEMKSLLDFMYKGEVNVGQNMLPMFLKTA 425
+SA S YF ++F N ++ + V M+S+L+F+Y GE+ + + + + L+ A
Sbjct: 52 LSASSDYFFAMFNGNMKESSQDVVTITGVTPDSMRSILNFIYTGEIVLDWDNVELILQGA 111
Query: 426 ESLQVRGLTE 455
+ V+ + +
Sbjct: 112 NLMLVQSVKD 121
>SB_8385| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 580
Score = 31.5 bits (68), Expect = 0.45
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +1
Query: 139 NNHPNNLTDVLASLLQREALCDVTLACDGETVKAHQTI 252
N H N V+ SL Q+ LCDV L + AH+ +
Sbjct: 21 NEHCNKAFQVMNSLRQQNMLCDVVLKAGSIEIPAHRVV 58
>SB_45623| Best HMM Match : BTB (HMM E-Value=1.4e-36)
Length = 574
Score = 30.7 bits (66), Expect = 0.79
Identities = 16/70 (22%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +3
Query: 252 ISACSPYFESIFLQN--SHPHPIIFLKDVRFAEMKSLLDFMYKGEVNVGQNMLPMFLKTA 425
++A S YF ++F + + LK ++ + +K +LDF+Y G + + + L+ +
Sbjct: 59 LAANSHYFMAMFTTDMIEKEQERVILKKLKPSVVKEILDFLYTGRIEIDNKNVRDLLEAS 118
Query: 426 ESLQVRGLTE 455
L + +T+
Sbjct: 119 SFLIISSVTD 128
Score = 28.3 bits (60), Expect = 4.2
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Frame = +1
Query: 139 NNHPNNLTDVLASLL----QREALCDVTLACDGETVKAHQTIFQHAHHILKA 282
N HP + +L L Q + LCDV L + E AH+ I H A
Sbjct: 17 NTHPTLMEGLLLKSLNDQRQSKILCDVVLLVENEEFSAHKGILAANSHYFMA 68
>SB_28350| Best HMM Match : BTB (HMM E-Value=1.1e-38)
Length = 518
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +1
Query: 142 NHPNNLTDVLASLLQREALCDVTLACDGETVKAHQTI 252
+H N V L L DVTL GE +KAH+ +
Sbjct: 20 SHENEAFSVFKELRDDGELLDVTLHVQGEEIKAHRVV 56
>SB_38099| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 380
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -3
Query: 536 SRTPRGIGSRAHYWRRSLFRLRIQCIVLCQT 444
SR G+R H+ RR LFR R +C+ + +T
Sbjct: 336 SRRHSTFGARRHHERRRLFRYRQRCVKIWRT 366
>SB_54322| Best HMM Match : Kelch_1 (HMM E-Value=0)
Length = 587
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +3
Query: 252 ISACSPYFESIFLQN--SHPHPIIFLKDVRFAEMKSLLDFMYKGEVNV 389
++A S YF +F P + L+++R + M +L ++Y GE+ V
Sbjct: 48 LAASSKYFYGLFTSEMIEKNAPSVKLQELRASVMNHILTYLYTGEITV 95
>SB_24478| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 747
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Frame = +3
Query: 393 QNMLPMFLKTAESLQVRGLT---ENNTLNPKSEERST 494
+N+ P LK ESL+ RG+ E LNPK + T
Sbjct: 368 ENLSPQILKEVESLEFRGVECSGEQKLLNPKDLDHCT 404
>SB_35310| Best HMM Match : Cadherin (HMM E-Value=5.9e-23)
Length = 1250
Score = 27.9 bits (59), Expect = 5.6
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 103 APTMDQQFCLRWNNHPNNLTDVLASLLQREAL 198
+P + +QFC R N+ P NLT +LL+ A+
Sbjct: 190 SPDVTRQFCRRLNDPPTNLTLSGNTLLEHAAV 221
>SB_34102| Best HMM Match : Kelch_1 (HMM E-Value=0)
Length = 628
Score = 27.5 bits (58), Expect = 7.3
Identities = 12/47 (25%), Positives = 27/47 (57%)
Frame = +3
Query: 315 IFLKDVRFAEMKSLLDFMYKGEVNVGQNMLPMFLKTAESLQVRGLTE 455
+ L+++ M++++DF Y G++ + + + L A LQV+ + E
Sbjct: 74 VTLQELDEKAMQNMIDFFYSGKIEISELNVQEVLPIACLLQVQSVQE 120
>SB_25086| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 27.5 bits (58), Expect = 7.3
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = -3
Query: 248 VWCALTVSPSQARVTSQRASLCRRLASTSVRLLGWLFQRKQNC 120
+WC + S + + S S+C L S + WL ++ Q+C
Sbjct: 9 IWCTASSSRGEVEIGSG-VSICAELQSMHGKDRVWLLRQSQSC 50
>SB_1926| Best HMM Match : PH (HMM E-Value=1.4e-23)
Length = 998
Score = 27.5 bits (58), Expect = 7.3
Identities = 10/38 (26%), Positives = 22/38 (57%)
Frame = +1
Query: 139 NNHPNNLTDVLASLLQREALCDVTLACDGETVKAHQTI 252
N+ + L +A L ++ D+T++ G+ +KAH+ +
Sbjct: 750 NSFVSRLLKTVADLYDKDLYSDITVSFGGQKIKAHKFV 787
>SB_46088| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3306
Score = 27.5 bits (58), Expect = 7.3
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 416 KNCRKFTSXRFDREQYIESEVGRAIDASSGRENLSRAEFAT 538
K C++F + E Y+ESE +DA GRE L + T
Sbjct: 1779 KPCQEFL---LELEGYLESEPSFGLDAGKGREELKTIDDLT 1816
>SB_1701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 404
Score = 27.5 bits (58), Expect = 7.3
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = +3
Query: 228 DSQGTPDNISACSPYFESIFLQNSHPHPIIFLKDVRFAEMKSLLDFMYKGEVNVGQNMLP 407
DS+ DNIS CS +F+ + + P + KD + E ++ D + VGQ ++P
Sbjct: 68 DSRARGDNISLCSDHFK----KECYDGPKLVSKDTKRTE-ENASDGPARSASGVGQTVVP 122
>SB_384| Best HMM Match : IBR (HMM E-Value=1.1e-12)
Length = 259
Score = 27.5 bits (58), Expect = 7.3
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -1
Query: 316 IMGCGCEFCRNMLSKYGEHA 257
+ CGC FC+ L +Y HA
Sbjct: 39 LKSCGCFFCKECLKQYVAHA 58
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,468,232
Number of Sequences: 59808
Number of extensions: 412079
Number of successful extensions: 1458
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1455
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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