Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060234.seq
         (538 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69902-7|CAA93769.1|  618|Caenorhabditis elegans Hypothetical pr...    36   0.014
AB023424-1|BAA82800.1|  618|Caenorhabditis elegans kel-1 protein.      36   0.014
AF067219-16|AAC17022.1|  531|Caenorhabditis elegans Hypothetical...    35   0.032
DQ338465-1|ABC67522.1|  690|Caenorhabditis elegans KEL-8 protein.      34   0.075
AF067946-5|AAC17684.4|  690|Caenorhabditis elegans Hypothetical ...    34   0.075
Z78062-3|CAB01496.1| 1232|Caenorhabditis elegans Hypothetical pr...    28   3.7  
Z68216-4|CAA92463.2|  565|Caenorhabditis elegans Hypothetical pr...    28   3.7  
Z70212-9|CAA94168.1|  491|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z50742-6|CAA90619.1|  491|Caenorhabditis elegans Hypothetical pr...    28   4.9  
U56966-10|AAA98722.1|  686|Caenorhabditis elegans Amyloid precur...    28   4.9  
U56966-9|AAK68242.1|  684|Caenorhabditis elegans Amyloid precurs...    28   4.9  
U00240-1|AAC46470.1|  680|Caenorhabditis elegans beta-amyloid pr...    28   4.9  
AL032618-1|CAB63366.1| 1045|Caenorhabditis elegans Hypothetical ...    27   6.5  
Z79759-4|CAB02139.2|  395|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U67737-1|AAC63596.1|  395|Caenorhabditis elegans MEL-26 protein.       27   8.6  

>Z69902-7|CAA93769.1|  618|Caenorhabditis elegans Hypothetical
           protein C47D12.7 protein.
          Length = 618

 Score = 36.3 bits (80), Expect = 0.014
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = +3

Query: 252 ISACSPYFESIFLQN--SHPHPIIFLKDVRFAEMKSLLDFMYKGEVNVGQNMLPMFLKTA 425
           +SA S YF ++F          II +K+V    +  L+D+MY G + + +  +   L TA
Sbjct: 89  LSASSSYFRAMFTGGLRESTQRIIPIKEVDVEVLSQLIDYMYTGRMRIDEQNVQTILATA 148

Query: 426 ESLQV 440
             LQ+
Sbjct: 149 SLLQL 153


>AB023424-1|BAA82800.1|  618|Caenorhabditis elegans kel-1 protein.
          Length = 618

 Score = 36.3 bits (80), Expect = 0.014
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = +3

Query: 252 ISACSPYFESIFLQN--SHPHPIIFLKDVRFAEMKSLLDFMYKGEVNVGQNMLPMFLKTA 425
           +SA S YF ++F          II +K+V    +  L+D+MY G + + +  +   L TA
Sbjct: 89  LSASSSYFRAMFTGGLRESTQRIIPIKEVDVEVLSQLIDYMYTGRMRIDEQNVQTILATA 148

Query: 426 ESLQV 440
             LQ+
Sbjct: 149 SLLQL 153


>AF067219-16|AAC17022.1|  531|Caenorhabditis elegans Hypothetical
           protein R12E2.1 protein.
          Length = 531

 Score = 35.1 bits (77), Expect = 0.032
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +1

Query: 139 NNH-PNNLTDVLASLLQREALCDVTLACDGETVKAHQTI 252
           N+H  N++   L  L  R+ LCDVTL C  + + AH+ +
Sbjct: 35  NSHFANSVLQQLGGLKNRDVLCDVTLICGWKRINAHRVV 73



 Score = 32.7 bits (71), Expect = 0.17
 Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
 Frame = +3

Query: 252 ISACSPYFESIFLQNSHPHPI--IFLKDVRFAEMKSLLDFMYKGEVNVGQNMLPMFLKTA 425
           +SACSPYF S+F        +  I ++++    +++L++F Y G + +  + +   L  A
Sbjct: 74  LSACSPYFLSMFTSQMAECYMREINMEEIEPPTLEALIEFCYTGAIAIDDSNVQDILPAA 133

Query: 426 ESLQV 440
             LQ+
Sbjct: 134 CLLQI 138


>DQ338465-1|ABC67522.1|  690|Caenorhabditis elegans KEL-8 protein.
          Length = 690

 Score = 33.9 bits (74), Expect = 0.075
 Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
 Frame = +1

Query: 127 CLRWNNHPNN--LTDVLASLLQREALCDVTLACDGETVKAHQTIFQHAHHILKAYSCKIR 300
           C+ + N   +  + + +  L Q E LCDV L   G  ++AH+ I   A    KA      
Sbjct: 85  CMEYENQEQSSKIMEQMRILRQTEELCDVELLVAGSVIRAHRYILAAASPYFKAMFTNGM 144

Query: 301 IHIPLYSLKMYDL 339
           + +   ++++ D+
Sbjct: 145 VEMKKLTIELQDI 157


>AF067946-5|AAC17684.4|  690|Caenorhabditis elegans Hypothetical
           protein W02G9.2 protein.
          Length = 690

 Score = 33.9 bits (74), Expect = 0.075
 Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
 Frame = +1

Query: 127 CLRWNNHPNN--LTDVLASLLQREALCDVTLACDGETVKAHQTIFQHAHHILKAYSCKIR 300
           C+ + N   +  + + +  L Q E LCDV L   G  ++AH+ I   A    KA      
Sbjct: 85  CMEYENQEQSSKIMEQMRILRQTEELCDVELLVAGSVIRAHRYILAAASPYFKAMFTNGM 144

Query: 301 IHIPLYSLKMYDL 339
           + +   ++++ D+
Sbjct: 145 VEMKKLTIELQDI 157


>Z78062-3|CAB01496.1| 1232|Caenorhabditis elegans Hypothetical
           protein F16D3.4 protein.
          Length = 1232

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -2

Query: 528 SARDRFSRPLLASIALPTSDSMY--CSLSNLXLVNFLQFLGTLVAY 397
           S + RF R  L ++    +  +   CS S L L  FLQFLG L+ Y
Sbjct: 22  SMKIRFQRAWLRNVFADKTTRLTRKCSSSMLHLREFLQFLGFLLKY 67


>Z68216-4|CAA92463.2|  565|Caenorhabditis elegans Hypothetical
           protein F27C8.5 protein.
          Length = 565

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 16/63 (25%), Positives = 28/63 (44%)
 Frame = +3

Query: 252 ISACSPYFESIFLQNSHPHPIIFLKDVRFAEMKSLLDFMYKGEVNVGQNMLPMFLKTAES 431
           I A S  F   F     P+    + D     ++ + D+MY GE+++ +  +   L  A  
Sbjct: 53  ICAHSDVFSETFDNQRAPYQPFNMTDFDPDSVRRVFDWMYSGEIDIPETTIADVLAVASY 112

Query: 432 LQV 440
           L+V
Sbjct: 113 LRV 115


>Z70212-9|CAA94168.1|  491|Caenorhabditis elegans Hypothetical
           protein R04D3.1 protein.
          Length = 491

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -1

Query: 493 VDRSSDFGFNVLFSVKPLTCKLSAVF 416
           VD S DFG   + ++KP TC+L A F
Sbjct: 468 VDMSYDFG--AVLTIKPYTCQLKAQF 491


>Z50742-6|CAA90619.1|  491|Caenorhabditis elegans Hypothetical
           protein R04D3.1 protein.
          Length = 491

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -1

Query: 493 VDRSSDFGFNVLFSVKPLTCKLSAVF 416
           VD S DFG   + ++KP TC+L A F
Sbjct: 468 VDMSYDFG--AVLTIKPYTCQLKAQF 491


>U56966-10|AAA98722.1|  686|Caenorhabditis elegans Amyloid
           precursor-like protein1, isoform a protein.
          Length = 686

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = -2

Query: 312 WDVDANFAGICFQNMVSMLKYCLVCLDCLSITSESDITESLSL 184
           W  D      CF   + +LKYC      ++IT+  + +  +S+
Sbjct: 55  WKTDDERYATCFSGKLDILKYCRKAYPSMNITNIVEYSHEVSI 97


>U56966-9|AAK68242.1|  684|Caenorhabditis elegans Amyloid
           precursor-like protein1, isoform b protein.
          Length = 684

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = -2

Query: 312 WDVDANFAGICFQNMVSMLKYCLVCLDCLSITSESDITESLSL 184
           W  D      CF   + +LKYC      ++IT+  + +  +S+
Sbjct: 55  WKTDDERYATCFSGKLDILKYCRKAYPSMNITNIVEYSHEVSI 97


>U00240-1|AAC46470.1|  680|Caenorhabditis elegans beta-amyloid
           protein precursor protein.
          Length = 680

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = -2

Query: 312 WDVDANFAGICFQNMVSMLKYCLVCLDCLSITSESDITESLSL 184
           W  D      CF   + +LKYC      ++IT+  + +  +S+
Sbjct: 49  WKTDDERYATCFSGKLDILKYCRKAYPSMNITNIVEYSHEVSI 91


>AL032618-1|CAB63366.1| 1045|Caenorhabditis elegans Hypothetical
           protein Y42A5A.1 protein.
          Length = 1045

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -1

Query: 484 SSDFGFNVLFSVKPLTCKLSAVFRNIGSIFWPTFTSPLYIKSSNDF-ISANRTSL 323
           S  F     F + PLT   S++  +  S   P+  S +Y KSS DF I  N T L
Sbjct: 81  SMSFALIYFFMIVPLT---SSILPSQSSPILPSDISTIYQKSSTDFPIFTNSTEL 132


>Z79759-4|CAB02139.2|  395|Caenorhabditis elegans Hypothetical
           protein ZK858.4 protein.
          Length = 395

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +1

Query: 142 NHPNNLTDVLASLLQREALCDVTLACDGETVKAHQTI 252
           N    L +    L  +E LCD  +  +G+ ++AH+ +
Sbjct: 182 NSEQQLIEDYQRLFSQELLCDFAINVNGKIIRAHKAV 218


>U67737-1|AAC63596.1|  395|Caenorhabditis elegans MEL-26 protein.
          Length = 395

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +1

Query: 142 NHPNNLTDVLASLLQREALCDVTLACDGETVKAHQTI 252
           N    L +    L  +E LCD  +  +G+ ++AH+ +
Sbjct: 182 NSEQQLIEDYQRLFSQELLCDFAINVNGKIIRAHKAV 218


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,531,350
Number of Sequences: 27780
Number of extensions: 298535
Number of successful extensions: 1016
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1013
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)