Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060234.seq
         (538 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      79   3e-17
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          69   3e-14
AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.      44   1e-06
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    22   4.6  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    22   4.6  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   6.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.0  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 79.0 bits (186), Expect = 3e-17
 Identities = 36/77 (46%), Positives = 50/77 (64%)
 Frame = +3

Query: 252 ISACSPYFESIFLQNSHPHPIIFLKDVRFAEMKSLLDFMYKGEVNVGQNMLPMFLKTAES 431
           +SACSPYF  +       HP+I L+DV F+++ +L++F+Y GEVNV Q  L  FLKTAE 
Sbjct: 50  LSACSPYFRELLKSTPCKHPVIVLQDVAFSDLHALVEFIYHGEVNVHQRSLSSFLKTAEV 109

Query: 432 LQVRGLTENNTLNPKSE 482
           L+V GLT+      + E
Sbjct: 110 LRVSGLTQQADQTDRDE 126



 Score = 59.3 bits (137), Expect = 2e-11
 Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 4/63 (6%)
 Frame = +1

Query: 118 QQFCLRWNNHPNNLTDVLASLLQREALCDVTLACDGETVKAHQTIFQ----HAHHILKAY 285
           Q FCLRWNN+ +++T    +L   E   DVTLACDG ++KAH+ +      +   +LK+ 
Sbjct: 5   QHFCLRWNNYQSSITSAFENLRDDEDFVDVTLACDGRSLKAHRVVLSACSPYFRELLKST 64

Query: 286 SCK 294
            CK
Sbjct: 65  PCK 67


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 68.9 bits (161), Expect = 3e-14
 Identities = 34/85 (40%), Positives = 54/85 (63%), Gaps = 3/85 (3%)
 Frame = +3

Query: 252 ISACSPYFESIFLQNSHPHPIIFL-KDVRFAEMKSLLDFMYKGEVNVGQNMLPMFLKTAE 428
           +SACS YF+ + L N   HP I + +DV F ++K +++F+Y+GE++V Q  L   LKTA+
Sbjct: 54  LSACSSYFQKLLLSNPCKHPTIIMPQDVCFNDLKFIIEFVYRGEIDVSQAELQSLLKTAD 113

Query: 429 SLQVRGLTE--NNTLNPKSEERSTP 497
            L+++GL E   +   P S   S+P
Sbjct: 114 QLKIKGLCEVPESRDGPPSVSLSSP 138



 Score = 60.1 bits (139), Expect = 1e-11
 Identities = 24/45 (53%), Positives = 33/45 (73%)
 Frame = +1

Query: 118 QQFCLRWNNHPNNLTDVLASLLQREALCDVTLACDGETVKAHQTI 252
           Q +CLRWNN+ +N+T V   LLQ EA  DVTLAC+  ++KAH+ +
Sbjct: 9   QHYCLRWNNYQSNMTSVFHQLLQTEAFVDVTLACNEASLKAHKVV 53


>AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.
          Length = 39

 Score = 43.6 bits (98), Expect = 1e-06
 Identities = 17/35 (48%), Positives = 23/35 (65%)
 Frame = +1

Query: 118 QQFCLRWNNHPNNLTDVLASLLQREALCDVTLACD 222
           Q FCLRWNN+ +++T    +L   E   DVTLAC+
Sbjct: 5   QHFCLRWNNYQSSITSAFENLRDDEDFVDVTLACE 39


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 335 SYIFKEYNGMWMRILQEYA 279
           S+I + Y   W +I+Q+YA
Sbjct: 96  SHIQRTYPKEWSKIVQQYA 114


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 335 SYIFKEYNGMWMRILQEYA 279
           S+I + Y   W +I+Q+YA
Sbjct: 96  SHIQRTYPKEWSKIVQQYA 114


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +1

Query: 82  NARSLTLAPTMDQQFCLRWNN 144
           N   L   P++DQ + L W N
Sbjct: 591 NPVQLWYVPSLDQVWILNWRN 611


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -1

Query: 124 IAGPLLVLMSVNVHLQKFCHHKRHPTPTL 38
           I  P  V +  N H+   C  +  PTPT+
Sbjct: 713 IVEPTDVSVERNKHVALHCQAQGVPTPTI 741


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -1

Query: 124 IAGPLLVLMSVNVHLQKFCHHKRHPTPTL 38
           I  P  V +  N H+   C  +  PTPT+
Sbjct: 709 IVEPTDVSVERNKHVALHCQAQGVPTPTI 737


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,534
Number of Sequences: 438
Number of extensions: 3333
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15213684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)