Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060233.seq
         (669 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0376 + 24809804-24809888,24810575-24810703,24810797-248110...    31   1.1  
11_06_0627 + 25633537-25633884,25635246-25635869                       30   1.5  
09_02_0253 - 6319198-6319240,6319364-6319552,6319650-6319995,632...    29   2.5  
01_05_0167 + 18849791-18849973,18850081-18850250,18850341-188504...    29   2.5  
06_03_1360 + 29558789-29559020,29559203-29559378,29560285-295603...    28   5.9  
06_01_0609 + 4404287-4405023,4405496-4405631,4405724-4405876,440...    28   7.7  

>04_04_0376 +
           24809804-24809888,24810575-24810703,24810797-24811020,
           24811398-24811607,24811697-24811789,24811899-24811937,
           24812041-24812130,24812214-24812316,24812388-24812468,
           24812929-24813005,24813156-24813236,24814165-24814256,
           24814536-24814662
          Length = 476

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +3

Query: 366 DDMVLVIVEDEPRDGYEEIVNKFEKN-IEEECDVENILETAA 488
           D + +V  +D+P +G E+  +KF+K  IE E +VE   + AA
Sbjct: 58  DLLAVVTKKDQPDEGIEDDFDKFQKEVIEAEAEVEASTDKAA 99


>11_06_0627 + 25633537-25633884,25635246-25635869
          Length = 323

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
 Frame = -2

Query: 434 KFIYNL---FVPVSGFIFNDNQDHVVFSFNIS-FVHFYCVKFEHVLNLAFGHSNFVL 276
           KF+++L    +PV   +F+    HV+F+ +    +H Y  K + ++    GH+++VL
Sbjct: 193 KFLHHLEGHHMPVRSMVFSPVDPHVLFTASDDCHIHIYDAKEKSLIGAMSGHASWVL 249


>09_02_0253 -
           6319198-6319240,6319364-6319552,6319650-6319995,
           6320811-6320893,6320977-6321074,6321384-6321461,
           6321891-6322000,6322083-6322180,6323199-6323296,
           6323403-6323463,6323688-6323831,6324103-6324206,
           6324634-6324787,6324860-6324879,6324967-6325029,
           6326521-6326632,6326711-6326796,6326872-6326899,
           6327242-6327293,6329034-6329250
          Length = 727

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 20/80 (25%), Positives = 37/80 (46%)
 Frame = -2

Query: 467 LNITLLFYIFFKFIYNLFVPVSGFIFNDNQDHVVFSFNISFVHFYCVKFEHVLNLAFGHS 288
           L+++LL Y F KF           +F  ++   + S +   + + C+   H+L   F  +
Sbjct: 248 LDLSLLLYPFPKFYMET-------LFAKHERLCMLSIDHVKLQYLCITIYHLLIACFTVN 300

Query: 287 NFVLLLMLLGFTRTVKLFKF 228
            F+  L+L     +V LFK+
Sbjct: 301 YFIYYLILCNLDHSVYLFKY 320


>01_05_0167 +
           18849791-18849973,18850081-18850250,18850341-18850413,
           18850729-18850839,18850947-18850992,18851085-18851148,
           18851810-18851912,18851999-18852094,18852186-18852215,
           18852434-18852533,18852761-18852845,18852965-18853088
          Length = 394

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = +3

Query: 336 KMDEADIKTEDDMVLVIVEDEPRDGYEEIVNKFEKNIEE-ECDVENILETAAKH 494
           +MDE + + +DD   +  ED+  +G E  +N+ EK     + + +NILET  +H
Sbjct: 76  EMDEEEDEEDDDDEEMNEEDDEDEGEE--MNELEKEYRTLQTNQQNILETLKQH 127


>06_03_1360 +
           29558789-29559020,29559203-29559378,29560285-29560346,
           29560426-29561212,29561516-29562244
          Length = 661

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 199 SKPNNPLRNFDYHSCSGYCSERLCKSQMNN 110
           S+P+    +  YH CS YC  ++ KS+ +N
Sbjct: 12  SRPDCVNSSNPYHECSDYCLRQIVKSREDN 41


>06_01_0609 +
           4404287-4405023,4405496-4405631,4405724-4405876,
           4405985-4406128,4406224-4406375,4406453-4406552,
           4406653-4406775,4406876-4407037,4407190-4407247,
           4407324-4407502,4408294-4408402,4408567-4408637,
           4408891-4408986,4409727-4409803,4410983-4411066,
           4411473-4411607,4411744-4411819,4413072-4413167,
           4413580-4413671,4413745-4413868,4413966-4414052
          Length = 996

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 23/86 (26%), Positives = 42/86 (48%)
 Frame = +3

Query: 300 CQVKYVFKFYTIKMDEADIKTEDDMVLVIVEDEPRDGYEEIVNKFEKNIEEECDVENILE 479
           C+ +Y   ++  K   ADI  E +       DEP +   + V+  +++ E + + E    
Sbjct: 320 CEYEYDIHWHNFKR-LADIDDEPE-TKEDPGDEPYNAGNDYVSDSDEDSEYDEEEEPTKC 377

Query: 480 TAAKHGHFIELKLNLRKRRTHGVRLI 557
           ++A+      L  NLRK RT+G++ I
Sbjct: 378 SSARTHQSHALAANLRKGRTYGLQKI 403


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,550,222
Number of Sequences: 37544
Number of extensions: 263486
Number of successful extensions: 622
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)