Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060233.seq
         (669 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20980| Best HMM Match : AlaDh_PNT_N (HMM E-Value=0.11)              32   0.37 
SB_48737| Best HMM Match : WD40 (HMM E-Value=1.5e-36)                  29   2.6  
SB_35649| Best HMM Match : M (HMM E-Value=6e-09)                       29   3.4  
SB_22922| Best HMM Match : DUF1599 (HMM E-Value=4.2)                   29   4.5  
SB_31795| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_19688| Best HMM Match : 7tm_1 (HMM E-Value=5.9e-22)                 28   6.0  
SB_39545| Best HMM Match : TolA (HMM E-Value=0.12)                     28   7.9  
SB_29744| Best HMM Match : Kinesin (HMM E-Value=6.3e-30)               28   7.9  
SB_22230| Best HMM Match : CARD (HMM E-Value=3.8e-17)                  28   7.9  

>SB_20980| Best HMM Match : AlaDh_PNT_N (HMM E-Value=0.11)
          Length = 253

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 16/58 (27%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
 Frame = +3

Query: 321 KFYTIKMDE-ADIKTEDDMVLVIVEDEPRDGYEEIVNKFEKNIEEECDVENILETAAK 491
           K++T + D+   +KT+ D  ++I++D+P  G +E++ +F +      D+E +L    K
Sbjct: 73  KYHTRERDQQTQLKTQIDTFILILQDQP--GAKEVIGRFTRGGGAILDIEYMLNEEGK 128


>SB_48737| Best HMM Match : WD40 (HMM E-Value=1.5e-36)
          Length = 885

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 473 FRNCSETRSFHRIKVEPAEEEDTWSQIDY 559
           F N +E ++ H +K EPA  E +W  +DY
Sbjct: 652 FANEAEEKAQHCLKAEPAFLEKSWKVLDY 680


>SB_35649| Best HMM Match : M (HMM E-Value=6e-09)
          Length = 1279

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/42 (28%), Positives = 25/42 (59%)
 Frame = +3

Query: 384 IVEDEPRDGYEEIVNKFEKNIEEECDVENILETAAKHGHFIE 509
           IV+DE +DG +E++++F+K   +   ++  +    +H   IE
Sbjct: 9   IVDDESKDGDDELMSEFQKVYSDNESLQKRVSELEEHQKVIE 50


>SB_22922| Best HMM Match : DUF1599 (HMM E-Value=4.2)
          Length = 119

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/76 (23%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
 Frame = +3

Query: 279 NKITVSECQVKYVFKFYTIKMDEADIKTEDDMVLVIVEDEPRD-----GYEEIVNKFEKN 443
           +K+   E  V+   +    + +E D++ EDD  +   E++PR+       + ++ + E +
Sbjct: 10  SKLMGDESPVRISGRRSNARREERDLRDEDDDEMCDRENDPRNLRRQSSTDNVLPQVEDD 69

Query: 444 IEEECDVENILETAAK 491
            E E D E +L+  A+
Sbjct: 70  NESEADEEEMLKYGAR 85


>SB_31795| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1525

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -1

Query: 498 DRVSLQFLKYSQHHTPLLYFFQIYLQSLRTRL 403
           DRV L    Y  H  PLL    IY  +LR +L
Sbjct: 846 DRVGLPIFSYDNHWQPLLSRQPIYSSNLRAQL 877


>SB_19688| Best HMM Match : 7tm_1 (HMM E-Value=5.9e-22)
          Length = 309

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -2

Query: 356 NISFVHFYCVKFEHVLNLAFGHSNFVLLLMLLGFTR 249
           N  F HF C  F +++N + G S  VL L+LL ++R
Sbjct: 73  NRLFEHFSCKMFYYIINTSHGAS--VLNLLLLTYSR 106


>SB_39545| Best HMM Match : TolA (HMM E-Value=0.12)
          Length = 1189

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +3

Query: 387 VEDEPRDGYEEIVNKFEKNIEEE-CDVENILETAAKHGHFIELKLNLRKRRTHGVRLI 557
           V  EPR   +EI    +  +EEE  DVE  LE  A      E+   +++ +  G+ LI
Sbjct: 207 VNAEPRSVPDEIDIHLDDEVEEEQVDVEKPLERDAPQPIHEEICAEIKETQESGIELI 264


>SB_29744| Best HMM Match : Kinesin (HMM E-Value=6.3e-30)
          Length = 291

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = +3

Query: 351 DIKTEDDMVLVIVEDEPRDG-YEEIVNKFEKNIEEECDVENILETAAKHGHFIELKLNLR 527
           D+ +  ++  V + + P+ G + E +++F     EE  +  +L T  K     E K+N  
Sbjct: 103 DLLSAGNLREVFLREHPKKGIFVERLSEFNVKCPEE--ISTLLHTGRKRLAIAETKMNRH 160

Query: 528 KRRTHGV 548
             R+H +
Sbjct: 161 SSRSHAI 167


>SB_22230| Best HMM Match : CARD (HMM E-Value=3.8e-17)
          Length = 555

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
 Frame = +3

Query: 342 DEADIK---TEDDMVLVIVEDEPRDG---YEEIVNKFEKNIEEECDVENILETAAKHGHF 503
           DE ++K   T +D    ++E  PR G   ++  V    KN++E   V  +L+   +    
Sbjct: 60  DEQEVKGKGTREDRCDKLLEILPRRGPNAFDAFVEAL-KNVQEFL-VGPLLQEVEREEKL 117

Query: 504 IELKLNLRKRRTHGVRL 554
            E+K  L + RTH  RL
Sbjct: 118 AEMKNELTRARTHSARL 134


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,716,631
Number of Sequences: 59808
Number of extensions: 337807
Number of successful extensions: 806
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)