Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060233.seq
(669 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81142-9|CAB03501.2| 370|Caenorhabditis elegans Hypothetical pr... 33 0.18
U00025-4|AAN65312.1| 606|Caenorhabditis elegans Hypothetical pr... 31 0.74
U00025-3|AAA50619.1| 804|Caenorhabditis elegans Hypothetical pr... 31 0.74
AB110824-1|BAD80739.1| 606|Caenorhabditis elegans chondroitin p... 31 0.74
AB110823-1|BAD80738.1| 804|Caenorhabditis elegans chondroitin p... 31 0.74
AC006712-1|AAK39323.1| 288|Caenorhabditis elegans Hypothetical ... 29 2.3
AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine re... 29 3.0
Z82056-1|CAB04854.1| 325|Caenorhabditis elegans Hypothetical pr... 28 5.2
AC006672-1|AAK84544.1| 305|Caenorhabditis elegans Hypothetical ... 28 6.9
Z95621-1|CAB09130.1| 357|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z69634-8|CAA93452.4| 591|Caenorhabditis elegans Hypothetical pr... 27 9.1
AF026213-8|AAB71303.1| 226|Caenorhabditis elegans Hypothetical ... 27 9.1
>Z81142-9|CAB03501.2| 370|Caenorhabditis elegans Hypothetical
protein ZK1037.1 protein.
Length = 370
Score = 33.1 bits (72), Expect = 0.18
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Frame = -2
Query: 467 LNITLLFYIFFKFIYNLFVPVSGFIFNDNQDHVVFSFN---ISFVHFYCVKFEHVLNLA 300
+N+T + K IY S FI + HVVFS N IS YC +FEHVLN++
Sbjct: 304 VNLTNFLFPSLKRIYPTSTVYSKFIAH----HVVFSNNNKIISTDPIYCDQFEHVLNVS 358
>U00025-4|AAN65312.1| 606|Caenorhabditis elegans Hypothetical
protein PAR2.4b protein.
Length = 606
Score = 31.1 bits (67), Expect = 0.74
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +3
Query: 396 EPRDGYEEIVN-KFEKNIEEECDVENILETAAKHGHFIELKLNLRKRRTHGVRLIMTT 566
+PR G + +V+ + K + E +V+N E+ + H LK + +RR H R+I +T
Sbjct: 245 DPRRGMDYMVDLTYRKTVNEMPEVDNRFESDNEAAHEESLKEIVVERRVHVSRMIAST 302
>U00025-3|AAA50619.1| 804|Caenorhabditis elegans Hypothetical
protein PAR2.4a protein.
Length = 804
Score = 31.1 bits (67), Expect = 0.74
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +3
Query: 396 EPRDGYEEIVN-KFEKNIEEECDVENILETAAKHGHFIELKLNLRKRRTHGVRLIMTT 566
+PR G + +V+ + K + E +V+N E+ + H LK + +RR H R+I +T
Sbjct: 443 DPRRGMDYMVDLTYRKTVNEMPEVDNRFESDNEAAHEESLKEIVVERRVHVSRMIAST 500
>AB110824-1|BAD80739.1| 606|Caenorhabditis elegans chondroitin
polymerizing factor-S protein.
Length = 606
Score = 31.1 bits (67), Expect = 0.74
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +3
Query: 396 EPRDGYEEIVN-KFEKNIEEECDVENILETAAKHGHFIELKLNLRKRRTHGVRLIMTT 566
+PR G + +V+ + K + E +V+N E+ + H LK + +RR H R+I +T
Sbjct: 245 DPRRGMDYMVDLTYRKTVNEMPEVDNRFESDNEAAHEESLKEIVVERRVHVSRMIAST 302
>AB110823-1|BAD80738.1| 804|Caenorhabditis elegans chondroitin
polymerizing factor protein.
Length = 804
Score = 31.1 bits (67), Expect = 0.74
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +3
Query: 396 EPRDGYEEIVN-KFEKNIEEECDVENILETAAKHGHFIELKLNLRKRRTHGVRLIMTT 566
+PR G + +V+ + K + E +V+N E+ + H LK + +RR H R+I +T
Sbjct: 443 DPRRGMDYMVDLTYRKTVNEMPEVDNRFESDNEAAHEESLKEIVVERRVHVSRMIAST 500
>AC006712-1|AAK39323.1| 288|Caenorhabditis elegans Hypothetical
protein Y119C1B.4 protein.
Length = 288
Score = 29.5 bits (63), Expect = 2.3
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +3
Query: 255 EPQKH**QNKITVSECQVKYVFKFYTIKMDEADIKTEDDMVLVIVEDEPRDGYEEIVNKF 434
EPQ H I V+EC+VK +T + + A ++ +D R ++ IVN +
Sbjct: 179 EPQAHPAGTPIPVNECKVKLKTPPWTRRWEVASVRGIEDTWTQATPWFKRKLHKTIVNDY 238
Query: 435 EK 440
EK
Sbjct: 239 EK 240
>AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 6 protein.
Length = 330
Score = 29.1 bits (62), Expect = 3.0
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 7/91 (7%)
Frame = -2
Query: 467 LNITLLFYIFFKFIYNLFVPVSGFIFNDNQDHVVFSFNISFV---HFYCVKFEHVLNLAF 297
L T+LF + I V S F +Q +F FN+ + H + F H LN F
Sbjct: 20 LRCTILFELVSSLIAVPLVIFSSFYIWKSQTSKLFHFNVIIIFQLHLFGF-FLHSLNRIF 78
Query: 296 GHSNFVLLLMLLGF----TRTVKLFKFRCNF 216
HS + +L + +T++ F FR +
Sbjct: 79 LHSTDLYSYTMLDYCNMPAKTMRCFVFRVQY 109
>Z82056-1|CAB04854.1| 325|Caenorhabditis elegans Hypothetical
protein T26H5.3 protein.
Length = 325
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = -2
Query: 455 LLFYIFFKFIYNLFVPVSGFIFNDNQDHVVFSFNISFVHF--YCVKFEHVL 309
L FY+ FI + V F+ +N+ H++F N + HF Y + F +++
Sbjct: 92 LFFYLGVTFITGVTTAV--FVTFENRFHILFGQNSKWRHFRKYAIVFSYII 140
>AC006672-1|AAK84544.1| 305|Caenorhabditis elegans Hypothetical
protein K08D12.5 protein.
Length = 305
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 437 FKFIYNLFVPVSGFIFNDNQDHVVFSFNISF 345
+ F ++L V G IFN+ D F F +SF
Sbjct: 22 YAFKFHLSTLVDGIIFNNEDDPTPFDFALSF 52
>Z95621-1|CAB09130.1| 357|Caenorhabditis elegans Hypothetical
protein VC27A7L.1 protein.
Length = 357
Score = 27.5 bits (58), Expect = 9.1
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = -2
Query: 455 LLFYIFFKFIYNLFVPVSGFIFNDNQDHVVFSFNISFVHFYCVKFEHVLNLAFGHSNFVL 276
LL F ++ V F F DN+ + + + F+HF+ +L+ SN V
Sbjct: 19 LLVGFFNTIVFFFSFQVKFFRFIDNRSNFIAIIYVGFIHFWVPIIFGILSYC---SNSVY 75
Query: 275 LLMLLGFTR-TVKLFKF 228
L ++L +R T+ +K+
Sbjct: 76 LFVVLTKSRSTIGAYKY 92
>Z69634-8|CAA93452.4| 591|Caenorhabditis elegans Hypothetical
protein B0001.3a protein.
Length = 591
Score = 27.5 bits (58), Expect = 9.1
Identities = 17/62 (27%), Positives = 27/62 (43%)
Frame = -2
Query: 383 NQDHVVFSFNISFVHFYCVKFEHVLNLAFGHSNFVLLLMLLGFTRTVKLFKFRCNFQRCK 204
NQ HV+ + + + N FG NFV + L+ + +F+FR + C
Sbjct: 85 NQTHVIMTTTARYDGLLEGNIVTLYNREFG--NFVDMDRLIAVRNKLVVFQFRVKYNFCN 142
Query: 203 GI 198
GI
Sbjct: 143 GI 144
>AF026213-8|AAB71303.1| 226|Caenorhabditis elegans Hypothetical
protein F08F1.3 protein.
Length = 226
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = -2
Query: 428 IYNLFVPVSGFIFNDNQDHVVFSFNISFVHF-YCVKFEHVLN 306
I+ + + ++ F+ N + HVVFS NI F+H V F+++ N
Sbjct: 140 IFLIVIFIAKFV-NFSFKHVVFSSNIKFLHLKILVYFDNIRN 180
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,661,204
Number of Sequences: 27780
Number of extensions: 276396
Number of successful extensions: 864
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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