Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060233.seq
         (669 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   3.5  
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    21   8.0  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   8.0  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   8.0  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 363 EDDMVLVIVEDEPRDGYEEIVNKF 434
           E +  ++I++DE  D +  IVN+F
Sbjct: 463 EKEPYVIILDDEHDDAFIGIVNQF 486


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 122 TNEQSASGLKIYCRKSQLCRLK 57
           T  Q  S L+I   + Q CRLK
Sbjct: 56  TKNQQCSILRINRNRCQYCRLK 77


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 122 TNEQSASGLKIYCRKSQLCRLK 57
           T  Q  S L+I   + Q CRLK
Sbjct: 105 TKNQQCSILRINRNRCQYCRLK 126


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +3

Query: 369 DMVLVIVEDEPRDGYEEIVNKFEKNIEE 452
           D++LV  +   +DG    ++K + +IEE
Sbjct: 421 DVILVGEQARAQDGLRRRMDKLKSSIEE 448


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,684
Number of Sequences: 438
Number of extensions: 3392
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)