Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060233.seq
         (669 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g64690.1 68414.m07333 expressed protein                             29   2.8  
At4g37900.1 68417.m05360 glycine-rich protein                          29   3.7  
At1g55610.1 68414.m06365 protein kinase family protein contains ...    29   3.7  
At5g66470.1 68418.m08382 expressed protein                             28   6.5  
At3g46160.1 68416.m04995 protein kinase-related contains eukaryo...    28   6.5  
At3g15120.1 68416.m01913 AAA-type ATPase family protein contains...    28   6.5  
At2g30280.1 68415.m03686 expressed protein                             28   6.5  
At2g39470.1 68415.m04844 photosystem II reaction center PsbP fam...    27   8.5  
At2g22660.1 68415.m02685 glycine-rich protein                          27   8.5  

>At1g64690.1 68414.m07333 expressed protein
          Length = 273

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 17/72 (23%), Positives = 37/72 (51%)
 Frame = +3

Query: 240 FYCSGEPQKH**QNKITVSECQVKYVFKFYTIKMDEADIKTEDDMVLVIVEDEPRDGYEE 419
           +YCS + Q+H  Q K  + +  + ++  F   ++ +A  + ++    +  E + R   E 
Sbjct: 46  YYCSSQSQQHQHQRKAFIWD--LNFIKVFMESELGKAQDEIKELKAELDYERKARRRAEL 103

Query: 420 IVNKFEKNIEEE 455
           ++ K  K++EEE
Sbjct: 104 MIKKLAKDVEEE 115


>At4g37900.1 68417.m05360 glycine-rich protein 
          Length = 787

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 94  LSPEADCSFVIYITFLNSIRYKSDNQNF 177
           L P  DC +V +   LN +RYK+D + F
Sbjct: 78  LVPPLDCEWVWHCHRLNPVRYKTDCEQF 105


>At1g55610.1 68414.m06365 protein kinase family protein contains
           Prosite:PS00107: Protein kinases ATP-binding region
           signature
          Length = 1166

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -3

Query: 226 VAISKDAKVSKPNNPLRNFDYHSCSGYCSERLCKSQMNNRLPG 98
           +A  +++  S PNN L N+ Y S  G CS R      + R+ G
Sbjct: 39  LAFKQNSVKSDPNNVLGNWKYESGRGSCSWRGVSCSDDGRIVG 81


>At5g66470.1 68418.m08382 expressed protein
          Length = 427

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
 Frame = +3

Query: 333 IKMDEADIKTEDDMVLVI-VEDEPRDGYEEIVNKFEKNIEEECDVENILETAAKHGHFIE 509
           +K    D++ +  M+LV+  +D  + G  EI  K E   E+  DV+ ++  +AK+GH IE
Sbjct: 230 LKEGLGDLEKKPPMLLVMNKKDLIKPG--EIAKKLEW-YEKFTDVDEVIPVSAKYGHGIE 286


>At3g46160.1 68416.m04995 protein kinase-related contains eukaryotic
           protein kinase domain, INTERPRO:IPR000719
          Length = 393

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 363 EDDMVLVIVEDEPRDGYEEIVNKFEKNIEEECDVE 467
           E++ +    ED+  DG E++  ++E N+E E  VE
Sbjct: 339 EEEEIYEEEEDDFYDGIEDVDEEYEANLEAEAAVE 373


>At3g15120.1 68416.m01913 AAA-type ATPase family protein contains
           PROSITE domains, PS00674: AAA-protein family signature
           and PS00017: ATP/GTP-binding site motif A (P-loop)
          Length = 1954

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/49 (20%), Positives = 30/49 (61%)
 Frame = +3

Query: 351 DIKTEDDMVLVIVEDEPRDGYEEIVNKFEKNIEEECDVENILETAAKHG 497
           +++ + ++ +  V++E R+  EE+ N+ E  +E+E    +++ + + +G
Sbjct: 291 EMRADTNVTMEAVQNESRNQMEELENEIEMGVEDEKKEMSVIVSESGNG 339


>At2g30280.1 68415.m03686 expressed protein
          Length = 346

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 4/41 (9%)
 Frame = +3

Query: 309 KYVFKFYTI--KMDEADIKTEDDMVLVIVEDEPR--DGYEE 419
           +YV+ +Y +  +MD ++  +++   LVIVEDE    DG +E
Sbjct: 219 EYVYDYYAVNEEMDISEDSSKNQFPLVIVEDEEEFCDGSDE 259


>At2g39470.1 68415.m04844 photosystem II reaction center PsbP family
           protein
          Length = 238

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +1

Query: 265 SINNKTKLLCPNAKLSTC 318
           +I++KT++LCPN  L  C
Sbjct: 16  TISHKTEILCPNPSLKAC 33


>At2g22660.1 68415.m02685 glycine-rich protein 
          Length = 819

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 94  LSPEADCSFVIYITFLNSIRYKSDNQNF 177
           L P  DC ++ +   LN +RY SD + F
Sbjct: 78  LVPPLDCEWIWHCHRLNPVRYNSDCEQF 105


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,461,606
Number of Sequences: 28952
Number of extensions: 239500
Number of successful extensions: 650
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)