Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060232.seq
         (653 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    22   3.8  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    22   5.1  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   8.9  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   8.9  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   8.9  

>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory receptor
           candidate 13 protein.
          Length = 390

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 17/49 (34%), Positives = 22/49 (44%)
 Frame = -3

Query: 255 RLLMESPASIILTASSKVQLPIFKRRIAVTSRSMHDISFTYDSDRYS*T 109
           R L ESP  I L    +V+L   +R +     S    S   D DR+S T
Sbjct: 2   RFLGESPNGIYLYHDGRVKLLEGRRVVDCDDVSSVSQSEAGDEDRFSFT 50


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 467 PFLMKCSKRPKIICKQPN 414
           PF + C+ RPK+   QP+
Sbjct: 87  PFNIDCTSRPKLQEPQPS 104


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = -3

Query: 528 CTTIRQRAIRVEHVGDVQQFSVSHEMFKAAQN 433
           CT + QR  RVE+      F+   E F    N
Sbjct: 584 CTLLLQRGYRVEYSAASDAFTHCPEGFNEFYN 615


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = -3

Query: 528 CTTIRQRAIRVEHVGDVQQFSVSHEMFKAAQN 433
           CT + QR  RVE+      F+   E F    N
Sbjct: 817 CTLLLQRGYRVEYSAASDAFTHCPEGFNEFYN 848


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = -3

Query: 528 CTTIRQRAIRVEHVGDVQQFSVSHEMFKAAQN 433
           CT + QR  RVE+      F+   E F    N
Sbjct: 817 CTLLLQRGYRVEYSAASDAFTHCPEGFNEFYN 848


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,360
Number of Sequences: 336
Number of extensions: 3473
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16865010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)