Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060232.seq
(653 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC4G3.05c |mus81||Holliday junction resolvase subunit Mus81|Sc... 31 0.15
SPAC12B10.09 |||S-adenosylmethionine transporter |Schizosaccharo... 26 4.1
SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyce... 26 4.1
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa... 26 5.5
SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha... 26 5.5
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc... 26 5.5
SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 7.2
SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase |Schizosaccharom... 25 7.2
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c... 25 9.5
>SPCC4G3.05c |mus81||Holliday junction resolvase subunit
Mus81|Schizosaccharomyces pombe|chr 3|||Manual
Length = 608
Score = 31.1 bits (67), Expect = 0.15
Identities = 20/48 (41%), Positives = 24/48 (50%)
Frame = +3
Query: 336 SRQRARSNRTADILFEQF*TRNFSRHVGLLANYFGPL*TFHEKRKTAA 479
S + A SN D LF TR+ V LLA + F+EKRKT A
Sbjct: 437 SIRTAVSNTQVDQLFHVRHTRSLEHSVSLLAEMTKQINLFYEKRKTLA 484
>SPAC12B10.09 |||S-adenosylmethionine transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 345
Score = 26.2 bits (55), Expect = 4.1
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +2
Query: 26 AKLIIYNYYAKYNEVHDVYGESYH 97
+KLIIYN ++ +H +G++ H
Sbjct: 40 SKLIIYNKVCQFGRIHIFHGKNRH 63
>SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = -1
Query: 596 GTNSXGTVSMHYSVHISYHTKFIVPPSDSALLGLNTLAMCSSFPFLMKC 450
G S T+S+ + + I PPS ++L LA+ ++ FL +C
Sbjct: 137 GLGSSATISVVVATSLLLAFGNIEPPSSNSLQNNKALALIEAWSFLGEC 185
>SPBC31F10.04c |srb4|med17|mediator complex subunit
Srb4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 25.8 bits (54), Expect = 5.5
Identities = 21/98 (21%), Positives = 39/98 (39%), Gaps = 2/98 (2%)
Frame = +2
Query: 68 VHDVYGESYHHHRIVQEYLSESYVNDMSC-IERDVTAMRRLKIGSCTFDEAVKMIDAGDS 244
V+D ES +E + + + C + D+T++ K + + + +
Sbjct: 91 VNDTEVESMDSQAYKKELIEQIMIAQTECSLALDMTSLLLSKFKENSIETISPFLKSTVP 150
Query: 245 IKSLPIG-SAPAKRRASTITSVKCWSKSTRWFPSACAF 355
SL S P + + S T KCW + + S+C F
Sbjct: 151 PSSLQFSRSQPPESKESDATLAKCWKEKS--LTSSCKF 186
>SPAC6B12.11 |drc1|sld1|DNA replication protein
Drc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +2
Query: 65 EVHDVYGESYHHHRIVQEYLSESYVNDMSCIERDVTAMRRLKI 193
++ D YG + +I+QE+ S S + S ++RD++ + KI
Sbjct: 206 DIEDDYGSN--EEKILQEFESFSSSSSESLVDRDISQPMKKKI 246
>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 703
Score = 25.8 bits (54), Expect = 5.5
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Frame = +2
Query: 53 AKYNEVHDVYGESYHHHRIVQEY---LSESYVNDMSCIERD--VTAMRRLKIGSCTF 208
AK + + VYG S+ ++ +QEY L+E+ D I RD + + GSC F
Sbjct: 257 AKNDSLQRVYGISFPDNKQMQEYKTFLAEAAKRDHRKIGRDQELFFFNEISPGSCFF 313
>SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 269
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = +2
Query: 140 NDMSCIERDVTAMRRLKIGSCTFDEAVKMIDAGDSIKS 253
+ + CI + + ++LK+ C +E +K+ D G I +
Sbjct: 170 HSLGCIPLNQDSFKQLKLLICILEEDIKLDDCGLEISA 207
>SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 365
Score = 25.4 bits (53), Expect = 7.2
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +1
Query: 292 DDNVRKVLEQIDAVVPVSV-RVQTGRQIFSLNNFEREISQDMLGCLQIILGRFEHFMRNG 468
D + K+ I+ SV R F+ NN +Q++L C++I+LG+ E
Sbjct: 85 DSEINKITHIINFAAESSVDRSFIDPLYFTKNNILS--TQNLLECVRILLGKKEELRNRL 142
Query: 469 KLLHIA 486
+H++
Sbjct: 143 NFVHVS 148
>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 606
Score = 25.0 bits (52), Expect = 9.5
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +2
Query: 50 YAKYNEVHDVYGESYH--HHRIVQEYLSESYVNDMSCIERDVTAMRRLKI 193
+A++N V++ Y + + V L+ Y MSCI DVT R L +
Sbjct: 361 FAEFNSVYNKYFDFTNPPSRSCVAAPLASEYRIVMSCIVGDVTEKRALHV 410
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,764,459
Number of Sequences: 5004
Number of extensions: 58020
Number of successful extensions: 193
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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